Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   YH61_RS03255 Genome accession   NZ_CP011330
Coordinates   711896..712696 (-) Length   266 a.a.
NCBI ID   WP_000841132.1    Uniprot ID   Q9ZMA6
Organism   Helicobacter pylori J99     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 706896..717696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YH61_RS03230 (YH61_03225) - 708362..709243 (+) 882 WP_001117208.1 RNA pseudouridine synthase -
  YH61_RS03235 (YH61_03230) - 709414..709974 (-) 561 WP_001035884.1 hypothetical protein -
  YH61_RS03240 (YH61_03235) - 709958..710296 (-) 339 WP_000699883.1 hypothetical protein -
  YH61_RS03245 (YH61_03240) - 710481..711269 (-) 789 WP_000013350.1 cysteine-rich Sel1 repeat protein -
  YH61_RS03250 (YH61_03245) dprB 711495..711899 (-) 405 WP_000599187.1 Holliday junction resolvase RuvX Machinery gene
  YH61_RS03255 (YH61_03250) dprA 711896..712696 (-) 801 WP_000841132.1 DNA-processing protein DprA Machinery gene
  YH61_RS03260 (YH61_03255) minE 712708..712941 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  YH61_RS03265 (YH61_03260) minD 712938..713744 (-) 807 WP_001019064.1 septum site-determining protein MinD -
  YH61_RS03270 (YH61_03265) ilvC 713769..714761 (-) 993 WP_001207810.1 ketol-acid reductoisomerase -
  YH61_RS03280 (YH61_03275) - 715010..715792 (+) 783 WP_001168315.1 NAD+ synthase -
  YH61_RS03285 (YH61_03280) - 715789..716727 (+) 939 WP_000833880.1 tetraacyldisaccharide 4'-kinase -
  YH61_RS03290 (YH61_03285) pseH 716660..717202 (-) 543 WP_000742726.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29884.85 Da        Isoelectric Point: 8.5799

>NTDB_id=144660 YH61_RS03255 WP_000841132.1 711896..712696(-) (dprA) [Helicobacter pylori J99]
MKSNFQYSTLENIPKAFDILKDPPKKLYCVGDIKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=144660 YH61_RS03255 WP_000841132.1 711896..712696(-) (dprA) [Helicobacter pylori J99]
ATGAAAAGCAATTTCCAATACAGCACGCTAGAAAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAGCT
CTATTGTGTGGGCGATATAAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATAGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACGATCACCCTAGCCAGAGAGCTTGCTAAAAATGGTGCGGTTATTGTGAGCGGAGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTTATCTATCCCACGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCATTAAAG
GCTCTTTTTTAGCCAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAGAAATACCAAAAACCCTTGTTTGTTTTACCCCAACGCCTGAATGAGAGCGACGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGATT
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGCGCGAAAAACCCTAGCTATGAAGAAGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATTAAGCGCATCAATCATCTCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9ZMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

97.368

100

0.974
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414

Multiple sequence alignment