Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   YH61_RS03250 Genome accession   NZ_CP011330
Coordinates   711495..711899 (-) Length   134 a.a.
NCBI ID   WP_000599187.1    Uniprot ID   Q9ZMA5
Organism   Helicobacter pylori J99     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 706495..716899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YH61_RS03225 (YH61_03220) recJ 706812..708362 (+) 1551 WP_000810766.1 single-stranded-DNA-specific exonuclease RecJ -
  YH61_RS03230 (YH61_03225) - 708362..709243 (+) 882 WP_001117208.1 RNA pseudouridine synthase -
  YH61_RS03235 (YH61_03230) - 709414..709974 (-) 561 WP_001035884.1 hypothetical protein -
  YH61_RS03240 (YH61_03235) - 709958..710296 (-) 339 WP_000699883.1 hypothetical protein -
  YH61_RS03245 (YH61_03240) - 710481..711269 (-) 789 WP_000013350.1 cysteine-rich Sel1 repeat protein -
  YH61_RS03250 (YH61_03245) dprB 711495..711899 (-) 405 WP_000599187.1 Holliday junction resolvase RuvX Machinery gene
  YH61_RS03255 (YH61_03250) dprA 711896..712696 (-) 801 WP_000841132.1 DNA-processing protein DprA Machinery gene
  YH61_RS03260 (YH61_03255) minE 712708..712941 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  YH61_RS03265 (YH61_03260) minD 712938..713744 (-) 807 WP_001019064.1 septum site-determining protein MinD -
  YH61_RS03270 (YH61_03265) ilvC 713769..714761 (-) 993 WP_001207810.1 ketol-acid reductoisomerase -
  YH61_RS03280 (YH61_03275) - 715010..715792 (+) 783 WP_001168315.1 NAD+ synthase -
  YH61_RS03285 (YH61_03280) - 715789..716727 (+) 939 WP_000833880.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15121.57 Da        Isoelectric Point: 9.1542

>NTDB_id=144659 YH61_RS03250 WP_000599187.1 711495..711899(-) (dprB) [Helicobacter pylori J99]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLRKKDIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSVEAYENLEHLGKKNKRIATKDGRLDSLSACRILERYCQQVLKKG

Nucleotide


Download         Length: 405 bp        

>NTDB_id=144659 YH61_RS03250 WP_000599187.1 711495..711899(-) (dprB) [Helicobacter pylori J99]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGAATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTGGAAGC
GATTTTACGCCACAACAGGAATCAAGCCTCTAGGGATTTGAGCGATTTATTGAGAAAAAAAGACATTCAAGTGCTGGTGG
TGGGCAAACCCAACGAAAGCTATGCAGATACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGATAATTCTAGCGTAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAGAAAAATAAGCGGAT
CGCTACCAAAGATGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGG
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9ZMA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.182

98.507

0.918

Multiple sequence alignment