Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   AWB63_RS10845 Genome accession   NZ_CP014144
Coordinates   1726230..1726979 (-) Length   249 a.a.
NCBI ID   WP_014634988.1    Uniprot ID   -
Organism   Streptococcus salivarius strain JF     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1721230..1731979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWB63_RS07805 (AWB63_07805) - 1722634..1724379 (+) 1746 WP_038676705.1 ABC transporter ATP-binding protein -
  AWB63_RS07810 (AWB63_07810) - 1724539..1724769 (+) 231 WP_021143664.1 bacteriocin class II family protein -
  AWB63_RS10725 - 1725246..1725413 (+) 168 WP_002884432.1 hypothetical protein -
  AWB63_RS10950 (AWB63_07820) - 1725742..1726143 (+) 402 WP_038676702.1 hypothetical protein -
  AWB63_RS10845 comD/comD3 1726230..1726979 (-) 750 WP_014634988.1 sensor histidine kinase Regulator
  AWB63_RS07830 (AWB63_07830) comE/blpR 1727561..1728301 (-) 741 WP_014634987.1 response regulator transcription factor Regulator
  AWB63_RS10540 - 1728555..1728689 (+) 135 Protein_1535 Blp family class II bacteriocin -
  AWB63_RS07835 (AWB63_07835) - 1728725..1729117 (+) 393 WP_003094909.1 hypothetical protein -
  AWB63_RS07840 (AWB63_07840) - 1729486..1729782 (+) 297 WP_038676700.1 bacteriocin immunity protein -
  AWB63_RS07845 (AWB63_07845) - 1730000..1730365 (+) 366 WP_013991116.1 hypothetical protein -
  AWB63_RS07850 (AWB63_07850) - 1730490..1730870 (+) 381 WP_038676698.1 hypothetical protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 28630.89 Da        Isoelectric Point: 5.6824

>NTDB_id=144480 AWB63_RS10845 WP_014634988.1 1726230..1726979(-) (comD/comD3) [Streptococcus salivarius strain JF]
MVIYLVLFFIMLIFLDRNIRATIQSQLDFQKDIQLSHLKNYNKQIENLYQSVRSFRHDYANILTTLKLGIEQNDMAIVKE
VYDSVLKDSDKHLKSKTFDLTRLINIGDNTIKSLLASKFLEAEENNIDVSLDIPETIKLEGMEMVDFITVISIFLDNAME
ASIQSDIPKMHIGYFNHGNKQLFIVQNSTREEFISITSLFERGVSSKEGNRGIGLANVRNILDNYQNISLKTESMTFAFT
QELNISKKA

Nucleotide


Download         Length: 750 bp        

>NTDB_id=144480 AWB63_RS10845 WP_014634988.1 1726230..1726979(-) (comD/comD3) [Streptococcus salivarius strain JF]
GTGGTTATTTATCTAGTCTTGTTCTTTATCATGCTTATCTTCTTAGATAGAAATATCCGAGCAACAATACAAAGTCAGTT
GGACTTTCAAAAAGATATTCAACTATCGCATCTTAAGAATTATAACAAACAGATTGAAAACCTCTATCAGTCGGTTCGAA
GTTTTCGTCATGATTATGCCAATATTTTAACAACACTCAAACTTGGTATCGAACAAAATGATATGGCTATTGTGAAAGAA
GTCTACGACTCAGTTCTAAAAGATTCCGATAAGCATTTAAAATCGAAAACATTTGATTTAACTCGCTTAATAAACATAGG
AGATAACACTATTAAAAGCCTACTTGCATCTAAGTTCCTAGAGGCAGAAGAAAATAACATTGATGTCTCTCTAGATATTC
CTGAAACTATCAAACTTGAGGGTATGGAGATGGTCGATTTTATTACTGTCATATCTATCTTTCTAGACAATGCGATGGAA
GCATCGATTCAGTCTGACATACCAAAAATGCATATTGGCTACTTCAACCATGGTAATAAACAGCTCTTTATTGTCCAAAA
CTCGACCCGGGAAGAATTCATTTCGATTACCTCACTTTTTGAGAGAGGTGTCTCAAGTAAAGAAGGTAATCGAGGTATAG
GTTTGGCCAACGTTAGGAATATCCTAGACAACTATCAAAATATTTCTTTAAAAACTGAAAGTATGACTTTTGCATTTACA
CAGGAACTTAATATATCGAAAAAAGCTTGA

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(142-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

41.152

97.59

0.402
  comD/blpH Streptococcus mutans UA159

39.184

98.394

0.386
  comD/comD2 Streptococcus equinus JB1

39.506

97.59

0.386

Multiple sequence alignment