Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   AWB63_RS08425 Genome accession   NZ_CP014144
Coordinates   1850558..1852588 (-) Length   676 a.a.
NCBI ID   WP_257001904.1    Uniprot ID   -
Organism   Streptococcus salivarius strain JF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1845558..1857588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWB63_RS08400 (AWB63_08400) - 1846797..1847765 (+) 969 WP_037602584.1 asparaginase -
  AWB63_RS10750 - 1847769..1847912 (+) 144 WP_002884712.1 hypothetical protein -
  AWB63_RS08405 (AWB63_08405) - 1847960..1848172 (-) 213 WP_022496194.1 helix-turn-helix domain-containing protein -
  AWB63_RS08410 (AWB63_08410) - 1848182..1848790 (-) 609 WP_022496193.1 DUF2975 domain-containing protein -
  AWB63_RS08415 (AWB63_08415) - 1848982..1849419 (-) 438 WP_022496192.1 hypothetical protein -
  AWB63_RS08420 (AWB63_08420) - 1850040..1850546 (-) 507 WP_004183442.1 hypothetical protein -
  AWB63_RS08425 (AWB63_08425) recG/mmsA 1850558..1852588 (-) 2031 WP_257001904.1 ATP-dependent DNA helicase RecG Machinery gene
  AWB63_RS08430 (AWB63_08430) alr 1852709..1853812 (-) 1104 WP_038676741.1 alanine racemase -
  AWB63_RS08435 (AWB63_08435) acpS 1853840..1854193 (-) 354 WP_038676744.1 holo-ACP synthase -
  AWB63_RS08440 (AWB63_08440) - 1854199..1855227 (-) 1029 WP_038676746.1 3-deoxy-7-phosphoheptulonate synthase -
  AWB63_RS08445 (AWB63_08445) - 1855312..1856343 (-) 1032 WP_038676747.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 75801.15 Da        Isoelectric Point: 5.6931

>NTDB_id=144447 AWB63_RS08425 WP_257001904.1 1850558..1852588(-) (recG/mmsA) [Streptococcus salivarius strain JF]
MIEDMIQLDSPIADLKGFGPKSAEKFTKLDLHTVGDLLLYFPFRYEDFKSKSIFELMDGEKAVITGTVVTPANVQYYGFK
RNRLSFKIKQGEAVIAISFFNQPYLVDKIEMGAEVAIFGKWDQKKSAVTGMKVLAQVEDDMQPVYHVAQGVSQAQLIKAI
RAAFDSGALNLLEESLPQVLMDKYRLMGRQEAVRAMHFPKDLAEYKQALRRTKFEELFYFQMNLQVLKAENKSETNGLAI
AYDEVKIKAKIAELPFPLTEAQQRSLSEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYGAYTAGLQSALMVPTEILAE
QHYQSLQGLFPELEVVLLTSGMKAADKKVALSKIESGEAQMIVGTHSLIQDAVTYHRLGLVITDEQHRFGVNQRRIFREK
GDNPDVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKPIITRWVKHEQLDTVLTWIKGELEKDAQVYFISPLIEESEA
LDLKNAVALHQELTDFFGDSATVALMHGRMKNDEKDQIMQDFKDRKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQ
LHQLRGRVGRGHKQSYCVLVANPKNDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNIL
EEARRVASQIVSDPNWRENPDWQVLGAHLRSQGEFD

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=144447 AWB63_RS08425 WP_257001904.1 1850558..1852588(-) (recG/mmsA) [Streptococcus salivarius strain JF]
ATGATAGAGGATATGATTCAACTAGATTCACCGATTGCGGATTTGAAAGGCTTTGGTCCTAAGTCCGCTGAAAAATTTAC
CAAATTAGATTTGCACACGGTTGGGGACCTCTTGCTTTATTTTCCTTTCCGATATGAAGATTTTAAGAGTAAGTCTATCT
TTGAACTGATGGATGGCGAAAAGGCTGTTATTACGGGAACGGTGGTGACACCTGCCAATGTGCAGTATTATGGCTTTAAA
CGGAATCGTCTGAGTTTTAAAATCAAGCAAGGAGAGGCAGTGATTGCCATTAGTTTCTTCAACCAGCCTTATCTTGTGGA
CAAGATTGAGATGGGGGCAGAAGTGGCTATTTTTGGCAAATGGGACCAGAAGAAGTCTGCAGTGACTGGTATGAAAGTGT
TGGCTCAAGTTGAGGACGATATGCAGCCAGTTTACCATGTGGCCCAGGGCGTTAGTCAGGCCCAGCTGATAAAGGCTATA
AGGGCAGCTTTTGATAGTGGGGCCTTGAATTTGTTGGAGGAGAGTCTCCCACAGGTGCTTATGGACAAGTATCGTCTTAT
GGGACGCCAAGAGGCTGTGCGTGCTATGCATTTTCCGAAAGATTTGGCTGAATATAAGCAGGCTTTACGTAGGACCAAGT
TTGAGGAGCTCTTTTATTTCCAGATGAACTTACAGGTGCTGAAGGCTGAGAATAAGTCCGAAACCAATGGTCTAGCAATT
GCTTACGATGAAGTCAAAATCAAAGCCAAAATTGCAGAATTACCATTCCCCTTGACAGAAGCCCAACAGCGTAGTTTATC
GGAAATCCTAGCTGATATGAAATCTGGGGCTCATATGAACCGTCTTTTGCAAGGAGATGTGGGTTCAGGGAAAACAGTTA
TCGCTAGTCTGGCCATGTATGGGGCTTATACGGCAGGATTGCAGTCTGCCCTCATGGTACCGACGGAAATTTTAGCGGAG
CAGCACTATCAGAGTTTACAGGGGCTTTTTCCTGAGCTAGAGGTAGTGCTCCTAACTTCTGGGATGAAGGCGGCGGACAA
AAAAGTAGCTCTTTCCAAAATCGAATCTGGCGAGGCTCAGATGATTGTGGGGACTCACTCACTGATTCAGGATGCTGTGA
CTTATCACAGGCTTGGGCTAGTAATTACTGATGAGCAGCACCGTTTTGGGGTTAATCAACGTCGTATTTTCCGTGAGAAA
GGTGACAATCCTGATGTCCTCATGATGACAGCGACACCTATCCCTAGGACCTTGGCAATCACTGCCTTTGGAGAAATGGA
TGTGTCAATCATTGACCAAATGCCAGCTGGGCGTAAGCCTATTATTACCCGTTGGGTTAAACATGAGCAACTAGATACCG
TACTGACTTGGATTAAGGGCGAGTTGGAAAAAGATGCTCAGGTCTATTTTATTTCACCTTTGATTGAAGAGTCTGAGGCT
CTCGATTTGAAAAATGCGGTGGCCCTTCATCAGGAACTCACAGATTTCTTTGGGGATTCAGCTACAGTGGCTCTGATGCA
CGGTCGCATGAAAAATGATGAAAAAGACCAAATTATGCAGGACTTCAAGGACAGAAAGTCTCAGATTTTAGTATCAACCA
CAGTTATCGAAGTAGGGGTTAACGTGCCAAATGCTACGGTTATGGTCATTATGGATGCCGACCGCTTTGGACTTAGCCAG
CTGCACCAACTTCGAGGACGTGTAGGTCGTGGCCATAAGCAGTCCTACTGTGTTTTGGTGGCTAATCCTAAAAATGATAC
CGGGAAAAAACGCATGCAGGCCATGTGTGAGACTACGGATGGTTTTGTTCTAGCAGAAGAGGACCTTAAAATGCGTGGTT
CAGGAGAGATCTTTGGGACACGTCAGTCAGGAATTCCTGAATTTCAAGTGGCTGATATTGTGGAAGACTATAATATCCTA
GAAGAAGCAAGGCGCGTGGCCAGCCAAATTGTATCTGACCCTAACTGGCGCGAGAATCCTGATTGGCAGGTGCTAGGAGC
TCATTTGAGAAGCCAAGGCGAGTTTGATTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-162)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(598-671)

DEAD/DEAH box helicase (DEAD)

(259-416)

Helicase conserved C-terminal domain (Helicase_C)

(463-571)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.535

99.26

0.71
  recG/mmsA Streptococcus pneumoniae R36A

71.535

99.26

0.71
  recG Bacillus subtilis subsp. subtilis str. 168

49.331

99.556

0.491
  recG Neisseria meningitidis strain C311

39.254

99.112

0.389