Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   XM40_RS11500 Genome accession   NZ_CP011278
Coordinates   2443410..2443745 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-S60     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2438410..2448745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XM40_RS11480 (XM40_11480) gcvT 2439021..2440121 (-) 1101 WP_014305405.1 glycine cleavage system aminomethyltransferase GcvT -
  XM40_RS11485 (XM40_11485) - 2440544..2442214 (+) 1671 WP_003153107.1 SNF2-related protein -
  XM40_RS11490 (XM40_11490) - 2442232..2443026 (+) 795 WP_014305407.1 YqhG family protein -
  XM40_RS11495 (XM40_11495) sinI 2443203..2443376 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  XM40_RS11500 (XM40_11500) sinR 2443410..2443745 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  XM40_RS11505 (XM40_11505) - 2443793..2444578 (-) 786 WP_003153102.1 TasA family protein -
  XM40_RS11510 (XM40_11510) - 2444642..2445226 (-) 585 WP_012117977.1 signal peptidase I -
  XM40_RS11515 (XM40_11515) tapA 2445198..2445869 (-) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  XM40_RS11520 (XM40_11520) - 2446128..2446457 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  XM40_RS11525 (XM40_11525) - 2446497..2446676 (-) 180 WP_003153093.1 YqzE family protein -
  XM40_RS11530 (XM40_11530) comGG 2446733..2447110 (-) 378 WP_043867284.1 competence type IV pilus minor pilin ComGG Machinery gene
  XM40_RS11535 (XM40_11535) comGF 2447111..2447506 (-) 396 WP_003153090.1 competence type IV pilus minor pilin ComGF -
  XM40_RS11540 (XM40_11540) comGE 2447520..2447834 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  XM40_RS11545 (XM40_11545) comGD 2447818..2448255 (-) 438 WP_043867285.1 competence type IV pilus minor pilin ComGD Machinery gene
  XM40_RS11550 (XM40_11550) comGC 2448245..2448553 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=144122 XM40_RS11500 WP_003153104.1 2443410..2443745(+) (sinR) [Bacillus velezensis strain L-S60]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=144122 XM40_RS11500 WP_003153104.1 2443410..2443745(+) (sinR) [Bacillus velezensis strain L-S60]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment