Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AL464_RS01340 Genome accession   NZ_CP014046
Coordinates   250307..251035 (+) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain ATCC 17802     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 245307..256035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL464_RS01325 (AL464_01210) clpC 245742..248315 (-) 2574 WP_029806340.1 ATP-dependent chaperone ClpB Regulator
  AL464_RS01330 (AL464_01215) pgeF 248463..249191 (-) 729 WP_029806341.1 peptidoglycan editing factor PgeF -
  AL464_RS01335 (AL464_01220) rluD 249193..250170 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AL464_RS01340 (AL464_01225) comL 250307..251035 (+) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  AL464_RS01345 (AL464_01230) - 251170..252651 (+) 1482 WP_029806541.1 lytic transglycosylase F -
  AL464_RS01350 (AL464_01235) hpf 252982..253308 (+) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AL464_RS01355 (AL464_01240) pheA 253552..254730 (+) 1179 WP_005468591.1 prephenate dehydratase -
  AL464_RS01360 (AL464_01245) yjjX 254755..255288 (+) 534 WP_021450232.1 inosine/xanthosine triphosphatase -
  AL464_RS01365 (AL464_01250) trpR 255337..255648 (-) 312 WP_005497218.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=144091 AL464_RS01340 WP_005460312.1 250307..251035(+) (comL) [Vibrio parahaemolyticus strain ATCC 17802]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=144091 AL464_RS01340 WP_005460312.1 250307..251035(+) (comL) [Vibrio parahaemolyticus strain ATCC 17802]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCTACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTGGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATTGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGTAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405

Multiple sequence alignment