Detailed information NTG0144090

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: XM40_RS01880
• Genome accession: NZ_CP011278
• Coordinates: 367701..368849 (+)
• Length: 382 a.a.
• NCBI ID: WP_014304340.1
• Uniprot ID: I2C1C2
• Organism: Bacillus velezensis strain L-S60
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 362701..373849

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XM40_RS01860 (XM40_01860)	-	363098..363781 (-)	684	WP_043866832.1	ABC transporter ATP-binding protein	-
XM40_RS01865 (XM40_01865)	-	363796..365232 (-)	1437	WP_043866833.1	ABC transporter permease	-
XM40_RS01870 (XM40_01870)	-	365445..366128 (+)	684	WP_015388707.1	response regulator transcription factor	-
XM40_RS01875 (XM40_01875)	-	366115..367548 (+)	1434	WP_161625271.1	HAMP domain-containing sensor histidine kinase	-
XM40_RS01880 (XM40_01880)	rapC	367701..368849 (+)	1149	WP_014304340.1	Rap family tetratricopeptide repeat protein	Regulator
XM40_RS01885 (XM40_01885)	phrC	368833..368952 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
XM40_RS18975	-	369103..369198 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
XM40_RS01890 (XM40_01890)	-	369293..370657 (-)	1365	WP_014304341.1	aspartate kinase	-
XM40_RS01895 (XM40_01895)	ceuB	371072..372025 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
XM40_RS01900 (XM40_01900)	-	372015..372962 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
XM40_RS01905 (XM40_01905)	-	372956..373714 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45494.75 Da
• Isoelectric Point: 4.9939

>NTDB_id=144090 XM40_RS01880 WP_014304340.1 367701..368849(+) (rapC) [Bacillus velezensis strain L-S60]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=144090 XM40_RS01880 WP_014304340.1 367701..368849(+) (rapC) [Bacillus velezensis strain L-S60]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTCGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

3D structure

• AlphaFold DB: I2C1C2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568