Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   WV34_RS18115 Genome accession   NZ_CP011252
Coordinates   3553824..3553943 (+) Length   39 a.a.
NCBI ID   WP_014471166.1    Uniprot ID   A0AAP7N737
Organism   Bacillus amyloliquefaciens strain MT45     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3548824..3558943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS18090 (WV34_17650) - 3550025..3550453 (-) 429 WP_016937596.1 DUF1934 domain-containing protein -
  WV34_RS20410 - 3550607..3551066 (+) 460 Protein_3489 bacteriocin biosynthesis protein AlbG -
  WV34_RS18100 (WV34_17660) - 3551072..3552466 (-) 1395 WP_065522435.1 YncE family protein -
  WV34_RS18110 (WV34_17665) rapF 3552695..3553840 (+) 1146 WP_088613621.1 tetratricopeptide repeat protein Regulator
  WV34_RS18115 (WV34_17670) phrF 3553824..3553943 (+) 120 WP_014471166.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  WV34_RS18120 (WV34_17675) speB 3554057..3554929 (-) 873 WP_088613622.1 agmatinase -
  WV34_RS18125 (WV34_17680) speE 3554988..3555818 (-) 831 WP_013353957.1 spermidine synthase -
  WV34_RS18130 (WV34_17685) - 3556018..3558090 (+) 2073 WP_088613623.1 transglycosylase domain-containing protein -
  WV34_RS18135 (WV34_17690) - 3558115..3558546 (-) 432 WP_088613624.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4266.10 Da        Isoelectric Point: 8.0195

>NTDB_id=143921 WV34_RS18115 WP_014471166.1 3553824..3553943(+) (phrF) [Bacillus amyloliquefaciens strain MT45]
MKLKYKLVLTCLAVGTVFVSADIASAPEHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=143921 WV34_RS18115 WP_014471166.1 3553824..3553943(+) (phrF) [Bacillus amyloliquefaciens strain MT45]
ATGAAATTGAAGTATAAATTAGTACTTACTTGCTTAGCTGTAGGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

70.37

69.231

0.487
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment