Detailed information NTG0143920

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: WV34_RS18110
• Genome accession: NZ_CP011252
• Coordinates: 3552695..3553840 (+)
• Length: 381 a.a.
• NCBI ID: WP_088613621.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MT45
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3547695..3558840

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WV34_RS18085 (WV34_17645)	argS	3548358..3550028 (-)	1671	WP_065522434.1	arginine--tRNA ligase	-
WV34_RS18090 (WV34_17650)	-	3550025..3550453 (-)	429	WP_016937596.1	DUF1934 domain-containing protein	-
WV34_RS20410	-	3550607..3551066 (+)	460	Protein_3489	bacteriocin biosynthesis protein AlbG	-
WV34_RS18100 (WV34_17660)	-	3551072..3552466 (-)	1395	WP_065522435.1	YncE family protein	-
WV34_RS18110 (WV34_17665)	rapF	3552695..3553840 (+)	1146	WP_088613621.1	tetratricopeptide repeat protein	Regulator
WV34_RS18115 (WV34_17670)	phrF	3553824..3553943 (+)	120	WP_014471166.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
WV34_RS18120 (WV34_17675)	speB	3554057..3554929 (-)	873	WP_088613622.1	agmatinase	-
WV34_RS18125 (WV34_17680)	speE	3554988..3555818 (-)	831	WP_013353957.1	spermidine synthase	-
WV34_RS18130 (WV34_17685)	-	3556018..3558090 (+)	2073	WP_088613623.1	transglycosylase domain-containing protein	-
WV34_RS18135 (WV34_17690)	-	3558115..3558546 (-)	432	WP_088613624.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45574.61 Da
• Isoelectric Point: 4.6479

>NTDB_id=143920 WV34_RS18110 WP_088613621.1 3552695..3553840(+) (rapF) [Bacillus amyloliquefaciens strain MT45]
MASVVSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELEHAEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVTDQIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAKEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLKDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=143920 WV34_RS18110 WP_088613621.1 3552695..3553840(+) (rapF) [Bacillus amyloliquefaciens strain MT45]
GTGGCGAGTGTTGTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATTAAAGAAGAGCTTGAGCATGCAGAAGATGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTGGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGCCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAATTGACGTACG
TTACAGATCAGATAGAAAAAGCGGAATTTTACTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGGCTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATCAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTTCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGGCAATATCATGACAAAGGAGTATCTTACGCGAAGG
AGGCGGAAGATTCATTATATATAGTGGAGTATGAATTTTTAGAATCTTTGTACGTCGGTGAGCCTGATGAAGAAGCAATT
ATGGAATGTTTTGACTTCCTCAAGGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
CCACGAGAGAGAAAACTTCGAGAAGGCTTCCGCATATTTTTTAAAAGTGGAAGAAACAAGACAGCAAATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (189-253)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	78.215	100	0.782
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572