Detailed information NTG0143916

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: WV34_RS17185
• Genome accession: NZ_CP011252
• Coordinates: 3371275..3372438 (-)
• Length: 387 a.a.
• NCBI ID: WP_088613545.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MT45
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3366275..3377438

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WV34_RS17155 (WV34_16740)	-	3366542..3366961 (-)	420	WP_013353782.1	TIGR03826 family flagellar region protein	-
WV34_RS17160 (WV34_16745)	comFC	3367035..3367730 (-)	696	WP_235608489.1	phosphoribosyltransferase family protein	Machinery gene
WV34_RS17165 (WV34_16750)	-	3367730..3368014 (-)	285	WP_013353784.1	competence protein ComFB	-
WV34_RS17170 (WV34_16755)	-	3368073..3369457 (-)	1385	Protein_3307	DEAD/DEAH box helicase	-
WV34_RS17175 (WV34_16760)	-	3369564..3370412 (-)	849	WP_088613544.1	DegV family protein	-
WV34_RS17180 (WV34_16765)	degU	3370509..3371198 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
WV34_RS17185 (WV34_16770)	degS	3371275..3372438 (-)	1164	WP_088613545.1	two-component sensor histidine kinase DegS	Regulator
WV34_RS17190 (WV34_16775)	-	3372661..3373308 (+)	648	WP_065982455.1	YigZ family protein	-
WV34_RS17195 (WV34_16780)	-	3373313..3374533 (+)	1221	WP_088613546.1	LCP family protein	-
WV34_RS17200 (WV34_16785)	-	3374633..3375709 (-)	1077	WP_013353790.1	MraY family glycosyltransferase	-
WV34_RS17205 (WV34_16790)	-	3375842..3377038 (-)	1197	WP_088613547.1	glycosyltransferase	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 44968.81 Da
• Isoelectric Point: 7.1256

>NTDB_id=143916 WV34_RS17185 WP_088613545.1 3371275..3372438(-) (degS) [Bacillus amyloliquefaciens strain MT45]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNCLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKEAKQKKNKSFGLLGMKERVDLLEGTITIDSKLGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=143916 WV34_RS17185 WP_088613545.1 3371275..3372438(-) (degS) [Bacillus amyloliquefaciens strain MT45]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAACAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAACTGGGCGACAAACTCGAAGTACATACCCGGCACGCAAGAAACCGCTTGTCGGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGACTCCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTGCCTGAATCAAGACCTTCGCCAAGTGGGGCTTCTGCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATTATCGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCGGCGCAAATGCTGGCAAATGTTATGATGAGATCGGAATTGATAGAACGGATTTTCCGCGACCGCG
GTACGGAGGACGGCTTTCAGGAAATCAGAAATCTTCGCCAGAATGTGCGGAATGCTCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGATACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTGAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACTGCTGACTTTGTTGTTCTTATCATTAAGGACAACGGAAAAGGCTTTGATATCAAGGAAGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTCGAAGGAACGATAACGATAGACTCTAAACTAGGTCTTG
GGACATTTATCATGATTAAGGTTCCTTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.065	99.483	0.946