Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   WV34_RS17160 Genome accession   NZ_CP011252
Coordinates   3367035..3367730 (-) Length   231 a.a.
NCBI ID   WP_235608489.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3362035..3372730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS17125 (WV34_16710) fliW 3362125..3362556 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  WV34_RS17130 (WV34_16715) - 3362586..3363155 (-) 570 WP_088613540.1 DUF6470 family protein -
  WV34_RS17135 (WV34_16720) flgL 3363247..3364164 (-) 918 WP_088613541.1 flagellar hook-associated protein FlgL -
  WV34_RS17140 (WV34_16725) flgK 3364176..3365693 (-) 1518 WP_088613542.1 flagellar hook-associated protein FlgK -
  WV34_RS17145 (WV34_16730) - 3365709..3366191 (-) 483 WP_013353780.1 flagellar protein FlgN -
  WV34_RS17150 (WV34_16735) flgM 3366206..3366472 (-) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  WV34_RS17155 (WV34_16740) - 3366542..3366961 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  WV34_RS17160 (WV34_16745) comFC 3367035..3367730 (-) 696 WP_235608489.1 phosphoribosyltransferase family protein Machinery gene
  WV34_RS17165 (WV34_16750) - 3367730..3368014 (-) 285 WP_013353784.1 competence protein ComFB -
  WV34_RS17170 (WV34_16755) - 3368073..3369457 (-) 1385 Protein_3307 DEAD/DEAH box helicase -
  WV34_RS17175 (WV34_16760) - 3369564..3370412 (-) 849 WP_088613544.1 DegV family protein -
  WV34_RS17180 (WV34_16765) degU 3370509..3371198 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WV34_RS17185 (WV34_16770) degS 3371275..3372438 (-) 1164 WP_088613545.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25563.33 Da        Isoelectric Point: 8.2964

>NTDB_id=143914 WV34_RS17160 WP_235608489.1 3367035..3367730(-) (comFC) [Bacillus amyloliquefaciens strain MT45]
MSLNCLLCDSPISRSLTWRSLFSLAPEQEVCSACSNQFEKIEGPVCSLCGRPQQSNEKCADCMARESKTEQRFLLRQNRS
VFLYNDAMKDSLARFKFRGDAKIIQAFERDFTAGFKAAYPANTHILVPIPLSPERLAERGFNQSELLASLLGMPVISPLI
RLNNEKQSKKSKTERLSAEKKFSAAENSAEGMNVVLIDDIYTTGATLHQAAEALLTAGKALSVSSFTLIRS

Nucleotide


Download         Length: 696 bp        

>NTDB_id=143914 WV34_RS17160 WP_235608489.1 3367035..3367730(-) (comFC) [Bacillus amyloliquefaciens strain MT45]
ATTTCTCTGAATTGTTTATTGTGTGACTCCCCCATTTCAAGATCACTGACTTGGAGATCTCTATTTTCTCTGGCGCCGGA
GCAAGAGGTATGCAGCGCATGCAGTAATCAATTTGAAAAAATCGAAGGCCCAGTATGCAGTTTATGCGGAAGGCCTCAGC
AGTCAAACGAAAAATGCGCTGACTGCATGGCGCGGGAATCAAAAACGGAACAGCGCTTTTTGTTGCGGCAGAACCGTTCG
GTTTTTTTGTATAATGATGCAATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATT
TGAACGTGATTTTACTGCCGGCTTTAAAGCAGCGTATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGTCCCG
AACGGCTGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCGCTGCTCGGAATGCCCGTCATTTCCCCCCTCATC
CGACTGAACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCCGCTGCCGAAAA
CTCCGCCGAAGGTATGAACGTCGTTTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGAAGCTC
TGCTGACAGCAGGCAAAGCGTTATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(173-229)

Double zinc ribbon domain (DZR_2)

(4-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.262

99.134

0.597

Multiple sequence alignment