Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   WV34_RS17180 Genome accession   NZ_CP011252
Coordinates   3370509..3371198 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain MT45     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3365509..3376198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS17145 (WV34_16730) - 3365709..3366191 (-) 483 WP_013353780.1 flagellar protein FlgN -
  WV34_RS17150 (WV34_16735) flgM 3366206..3366472 (-) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  WV34_RS17155 (WV34_16740) - 3366542..3366961 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  WV34_RS17160 (WV34_16745) comFC 3367035..3367730 (-) 696 WP_235608489.1 phosphoribosyltransferase family protein Machinery gene
  WV34_RS17165 (WV34_16750) - 3367730..3368014 (-) 285 WP_013353784.1 competence protein ComFB -
  WV34_RS17170 (WV34_16755) - 3368073..3369457 (-) 1385 Protein_3307 DEAD/DEAH box helicase -
  WV34_RS17175 (WV34_16760) - 3369564..3370412 (-) 849 WP_088613544.1 DegV family protein -
  WV34_RS17180 (WV34_16765) degU 3370509..3371198 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WV34_RS17185 (WV34_16770) degS 3371275..3372438 (-) 1164 WP_088613545.1 two-component sensor histidine kinase DegS Regulator
  WV34_RS17190 (WV34_16775) - 3372661..3373308 (+) 648 WP_065982455.1 YigZ family protein -
  WV34_RS17195 (WV34_16780) - 3373313..3374533 (+) 1221 WP_088613546.1 LCP family protein -
  WV34_RS17200 (WV34_16785) - 3374633..3375709 (-) 1077 WP_013353790.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=143915 WV34_RS17180 WP_003219701.1 3370509..3371198(-) (degU) [Bacillus amyloliquefaciens strain MT45]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=143915 WV34_RS17180 WP_003219701.1 3370509..3371198(-) (degU) [Bacillus amyloliquefaciens strain MT45]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAAGCGGCTCGTATCGTCGAGCATTATCATCCCGATGTCGTCA
TAATGGATATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAGCAGCTTGTTGAGCTGTACCCTGAATCTAAGGTA
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGATGCGGATACTTTAATCGAGGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCACCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAACGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment