Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   WV34_RS14990 Genome accession   NZ_CP011252
Coordinates   2951340..2951984 (-) Length   214 a.a.
NCBI ID   WP_014472195.1    Uniprot ID   A0AAP7N9U7
Organism   Bacillus amyloliquefaciens strain MT45     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2946340..2956984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS14955 (WV34_14595) - 2947525..2947956 (+) 432 WP_013353387.1 Na(+)/H(+) antiporter subunit B -
  WV34_RS14960 (WV34_14600) - 2947956..2948297 (+) 342 WP_013353388.1 Na(+)/H(+) antiporter subunit C -
  WV34_RS14965 (WV34_14605) - 2948290..2949771 (+) 1482 WP_088613349.1 Na+/H+ antiporter subunit D -
  WV34_RS14970 (WV34_14610) - 2949777..2950253 (+) 477 WP_065982196.1 Na+/H+ antiporter subunit E -
  WV34_RS14975 (WV34_14615) - 2950253..2950537 (+) 285 WP_045509491.1 Na(+)/H(+) antiporter subunit F1 -
  WV34_RS14980 (WV34_14620) mnhG 2950521..2950895 (+) 375 WP_045509488.1 monovalent cation/H(+) antiporter subunit G -
  WV34_RS14985 (WV34_14625) - 2950935..2951318 (-) 384 WP_045509485.1 hotdog fold thioesterase -
  WV34_RS14990 (WV34_14630) comA 2951340..2951984 (-) 645 WP_014472195.1 response regulator transcription factor Regulator
  WV34_RS14995 (WV34_14635) comP 2952065..2954356 (-) 2292 WP_088613350.1 histidine kinase Regulator
  WV34_RS15000 (WV34_14640) comX 2954368..2954532 (-) 165 WP_007613432.1 competence pheromone ComX -
  WV34_RS15005 (WV34_14645) - 2954532..2955443 (-) 912 WP_088613883.1 polyprenyl synthetase family protein -
  WV34_RS15010 (WV34_14650) degQ 2955595..2955735 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  WV34_RS15020 (WV34_14655) - 2956200..2956541 (+) 342 WP_045509476.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24253.65 Da        Isoelectric Point: 4.9953

>NTDB_id=143909 WV34_RS14990 WP_014472195.1 2951340..2951984(-) (comA) [Bacillus amyloliquefaciens strain MT45]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=143909 WV34_RS14990 WP_014472195.1 2951340..2951984(-) (comA) [Bacillus amyloliquefaciens strain MT45]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCCGATGCCAGTGAACAATTCGTTCTTCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAACCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTTTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCACGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTTAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGTTGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACCGAGAGAGCGCCAT
ATTCTTCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATTGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86

Multiple sequence alignment