Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   APT60_RS26605 Genome accession   NZ_CP013989
Coordinates   5799951..5800574 (-) Length   207 a.a.
NCBI ID   WP_003103268.1    Uniprot ID   G3XD51
Organism   Pseudomonas aeruginosa strain USDA-ARS-USMARC-41639     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5794951..5805574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APT60_RS26585 (APT60_26585) aroB 5795546..5796652 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  APT60_RS26590 (APT60_26590) aroK 5796702..5797220 (-) 519 WP_003095833.1 shikimate kinase AroK -
  APT60_RS26595 (APT60_26595) pilQ 5797232..5799376 (-) 2145 WP_003161249.1 type 4a pilus secretin PilQ Machinery gene
  APT60_RS26600 (APT60_26600) comL/pilP 5799430..5799954 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  APT60_RS26605 (APT60_26605) pilO 5799951..5800574 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  APT60_RS26610 (APT60_26610) pilN 5800571..5801167 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  APT60_RS26615 (APT60_26615) pilM 5801167..5802231 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  APT60_RS26620 (APT60_26620) - 5802416..5804887 (+) 2472 WP_059349813.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22819.26 Da        Isoelectric Point: 4.7787

>NTDB_id=143791 APT60_RS26605 WP_003103268.1 5799951..5800574(-) (pilO) [Pseudomonas aeruginosa strain USDA-ARS-USMARC-41639]
MSLASSLESLRKIDINDLDLNNIGSWPAAVKVIVCVLLTAAVLALGYNFHLSDMQAQLEQQAAEEETLKQQFSTKAFQAA
NLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATF
VSGVSSLPRIVTLHDFEIKPVAPGSTSKLRMSILAKTYRYNDKGLKK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=143791 APT60_RS26605 WP_003103268.1 5799951..5800574(-) (pilO) [Pseudomonas aeruginosa strain USDA-ARS-USMARC-41639]
ATGAGTCTGGCGAGTTCCCTGGAAAGTCTGCGCAAGATCGATATCAACGATCTCGACCTGAACAACATCGGTTCCTGGCC
GGCGGCGGTCAAGGTCATCGTCTGCGTGCTGCTGACCGCGGCGGTCCTGGCGCTGGGCTACAACTTCCATCTGAGTGACA
TGCAGGCTCAGCTCGAACAGCAGGCCGCGGAAGAGGAGACGCTCAAGCAGCAGTTCTCCACCAAGGCCTTCCAGGCCGCG
AACCTGGAAGCCTACAAGGCACAGATGAAGGAGATGGAAGAGTCCTTTGGCGCCTTGCTGCGGCAGTTGCCCAGCGACAC
CGAGGTACCCGGGCTGCTCGAGGACATCACTCGTACCGGCCTGGGCAGCGGCCTGGAGTTCGAGGAAATCAAGCTGCTTC
CCGAGGTTGCCCAGCAGTTCTACATCGAGCTGCCGATCCAGATCAGCGTGGTCGGCGGCTACCACGACTTGGCGACCTTC
GTCAGCGGCGTGTCCAGCCTGCCGCGGATCGTCACCCTGCATGACTTCGAGATCAAGCCGGTCGCGCCCGGCAGCACGTC
CAAGCTGCGCATGAGCATCCTGGCCAAGACCTATCGCTACAACGACAAGGGGCTGAAGAAATGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(58-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G3XD51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Legionella pneumophila strain ERS1305867

46.114

93.237

0.43
  pilO Acinetobacter baumannii D1279779

43.979

92.271

0.406
  comO/pilO Acinetobacter baylyi ADP1

43.455

92.271

0.401