Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   SMQ301_RS08985 Genome accession   NZ_CP011217
Coordinates   1717850..1718950 (-) Length   366 a.a.
NCBI ID   WP_120764773.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain SMQ-301     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1712850..1723950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMQ301_RS12625 (SMQ301_1861) - 1713175..1713450 (-) 276 WP_011681681.1 hypothetical protein -
  SMQ301_RS08945 (SMQ301_1862) - 1713462..1713659 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  SMQ301_RS08950 (SMQ301_1863) - 1713908..1715101 (-) 1194 WP_014608740.1 acetate kinase -
  SMQ301_RS08955 (SMQ301_1864) comYH 1715157..1716113 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  SMQ301_RS08960 (SMQ301_1865) comGG 1716158..1716475 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG -
  SMQ301_RS08965 (SMQ301_1866) comYF 1716453..1716890 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  SMQ301_RS08970 comGE 1716874..1717167 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  SMQ301_RS08975 (SMQ301_1868) comYD 1717139..1717567 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  SMQ301_RS08980 (SMQ301_1869) comYC 1717527..1717853 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  SMQ301_RS08985 (SMQ301_1870) comYB 1717850..1718950 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  SMQ301_RS08990 (SMQ301_1871) comYA 1718832..1719773 (-) 942 WP_014622005.1 competence type IV pilus ATPase ComGA Machinery gene
  SMQ301_RS08995 (SMQ301_1872) - 1719854..1720216 (-) 363 WP_023909982.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41876.03 Da        Isoelectric Point: 10.1377

>NTDB_id=143653 SMQ301_RS08985 WP_120764773.1 1717850..1718950(-) (comYB) [Streptococcus thermophilus strain SMQ-301]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKETSLSLM
KESLIRGDRLYQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=143653 SMQ301_RS08985 WP_120764773.1 1717850..1718950(-) (comYB) [Streptococcus thermophilus strain SMQ-301]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTCATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAACATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGTATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.678

93.443

0.511
  comYB Streptococcus mutans UA159

54.678

93.443

0.511
  comYB Streptococcus gordonii str. Challis substr. CH1

51.17

93.443

0.478
  comGB/cglB Streptococcus mitis NCTC 12261

50.453

90.437

0.456
  comGB/cglB Streptococcus mitis SK321

49.697

90.164

0.448
  comGB/cglB Streptococcus pneumoniae Rx1

49.695

89.617

0.445
  comGB/cglB Streptococcus pneumoniae D39

49.695

89.617

0.445
  comGB/cglB Streptococcus pneumoniae R6

49.695

89.617

0.445
  comGB/cglB Streptococcus pneumoniae TIGR4

49.695

89.617

0.445
  comGB Lactococcus lactis subsp. cremoris KW2

45.758

90.164

0.413

Multiple sequence alignment