Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SMQ301_RS06905 Genome accession   NZ_CP011217
Coordinates   1321763..1322689 (-) Length   308 a.a.
NCBI ID   WP_002946409.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain SMQ-301     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1316763..1327689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMQ301_RS06875 (SMQ301_1422) - 1316836..1317630 (-) 795 WP_011681412.1 HAD-IIB family hydrolase -
  SMQ301_RS06880 (SMQ301_1423) - 1317815..1318192 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  SMQ301_RS06885 (SMQ301_1424) - 1318197..1318895 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  SMQ301_RS06890 (SMQ301_1425) - 1318907..1319692 (+) 786 WP_011681414.1 hypothetical protein -
  SMQ301_RS06895 (SMQ301_1426) amiF 1319746..1320675 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein Regulator
  SMQ301_RS06900 (SMQ301_1427) amiE 1320668..1321753 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  SMQ301_RS06905 (SMQ301_1428) amiD 1321763..1322689 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  SMQ301_RS06910 (SMQ301_1429) amiC 1322689..1324182 (-) 1494 WP_011681416.1 ABC transporter permease Regulator
  SMQ301_RS06915 (SMQ301_1430) amiA 1324244..1326211 (-) 1968 WP_046206489.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34694.85 Da        Isoelectric Point: 9.7054

>NTDB_id=143635 SMQ301_RS06905 WP_002946409.1 1321763..1322689(-) (amiD) [Streptococcus thermophilus strain SMQ-301]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=143635 SMQ301_RS06905 WP_002946409.1 1321763..1322689(-) (amiD) [Streptococcus thermophilus strain SMQ-301]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

100

100

1
  amiD Streptococcus thermophilus LMD-9

100

100

1
  amiD Streptococcus salivarius strain HSISS4

96.429

100

0.964

Multiple sequence alignment