Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SMQ301_RS06895 Genome accession   NZ_CP011217
Coordinates   1319746..1320675 (-) Length   309 a.a.
NCBI ID   WP_011681415.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain SMQ-301     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1314746..1325675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMQ301_RS06870 (SMQ301_1421) - 1316025..1316843 (-) 819 WP_011681411.1 Cof-type HAD-IIB family hydrolase -
  SMQ301_RS06875 (SMQ301_1422) - 1316836..1317630 (-) 795 WP_011681412.1 HAD-IIB family hydrolase -
  SMQ301_RS06880 (SMQ301_1423) - 1317815..1318192 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  SMQ301_RS06885 (SMQ301_1424) - 1318197..1318895 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  SMQ301_RS06890 (SMQ301_1425) - 1318907..1319692 (+) 786 WP_011681414.1 hypothetical protein -
  SMQ301_RS06895 (SMQ301_1426) amiF 1319746..1320675 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein Regulator
  SMQ301_RS06900 (SMQ301_1427) amiE 1320668..1321753 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  SMQ301_RS06905 (SMQ301_1428) amiD 1321763..1322689 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  SMQ301_RS06910 (SMQ301_1429) amiC 1322689..1324182 (-) 1494 WP_011681416.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35170.30 Da        Isoelectric Point: 6.7823

>NTDB_id=143633 SMQ301_RS06895 WP_011681415.1 1319746..1320675(-) (amiF) [Streptococcus thermophilus strain SMQ-301]
MPEKLVEVKNVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=143633 SMQ301_RS06895 WP_011681415.1 1319746..1320675(-) (amiF) [Streptococcus thermophilus strain SMQ-301]
ATGCCTGAGAAATTAGTTGAAGTAAAAAATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

100

100

1
  amiF Streptococcus thermophilus LMG 18311

99.676

100

0.997
  amiF Streptococcus salivarius strain HSISS4

97.735

100

0.977

Multiple sequence alignment