Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   AVT04_RS07730 Genome accession   NZ_CP013939
Coordinates   1440956..1442929 (+) Length   657 a.a.
NCBI ID   WP_059257396.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S9     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1435956..1447929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS10810 - 1436860..1438212 (+) 1353 Protein_1424 IS3 family transposase -
  AVT04_RS07715 (AVT04_07715) - 1438258..1439463 (-) 1206 WP_011227415.1 OFA family MFS transporter -
  AVT04_RS07720 (AVT04_07720) - 1439812..1440126 (+) 315 Protein_1426 TatD family hydrolase -
  AVT04_RS11280 - 1440158..1440568 (+) 411 Protein_1427 ATP-binding cassette domain-containing protein -
  AVT04_RS10090 - 1440562..1440752 (+) 191 Protein_1428 IS3 family transposase -
  AVT04_RS07730 (AVT04_07730) amiA3 1440956..1442929 (+) 1974 WP_059257396.1 peptide ABC transporter substrate-binding protein Regulator
  AVT04_RS10095 - 1442974..1444223 (-) 1250 Protein_1430 ISL3 family transposase -
  AVT04_RS07740 (AVT04_07740) amiA 1444579..1446546 (+) 1968 WP_059257397.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 72214.19 Da        Isoelectric Point: 5.1770

>NTDB_id=143254 AVT04_RS07730 WP_059257396.1 1440956..1442929(+) (amiA3) [Streptococcus thermophilus strain S9]
MKKSKWLALAGAALLGVGVLAACSSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKSVVTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVGVK
AIDDYTLQYTLKKPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWDKK
NVHFDAIKFSYYDGSDQDALVRGFTDGAYNFARVFPTSSNYASVEKKYKDNIYYTAPGASTSAIGINIDRQSYKYTAKKT
DSEKSSTKKALLNKDFRQAINFAIDRKAYQSQINGKDGATLAVRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
ADSQDGLYNAEKAKTEFAKAKDALQADGVQFPIHLDLPVDQSSKLNVAQAQSLKQTIEKSLGSENVVIDINQLSSDDLEN
VTLNAANAAAEDWDISNGVAWAPDYQDPSTYLDIFKTTSSENTKAFMGYDDPNNAAAAQVGLKDYDALLNSAASETSDLN
VRYDRYAQAQAWLEDSSLVIPLTVGNGAAPAISRLTPFTGASIQVGDKNSSNDYIKYVKPQEKVVTKKEYEQSREKWLKE
KKESNEKAQKDLEKHVK

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=143254 AVT04_RS07730 WP_059257396.1 1440956..1442929(+) (amiA3) [Streptococcus thermophilus strain S9]
ATGAAAAAAAGCAAATGGTTGGCTCTCGCGGGTGCAGCACTTCTAGGTGTTGGTGTGTTAGCGGCTTGTTCATCTAAATC
AAACACTAGCGGAACTACTTATGGTTATGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATACGGGAC
CTACAAAATCTGTTGTGACAAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGCGGATTCCAAAGCAGGTGGTATCT
ATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGTGTCAAG
GCAATTGATGACTATACTTTGCAGTACACGCTTAAGAAACCAGAACCATACTGGAACTCTAAGACAACTTATAGTTTGCT
TTTCCCAGTAAATGAGGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTTTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGACAAGAAA
AATGTACACTTTGATGCCATCAAATTCTCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCACTGATGG
TGCTTATAATTTTGCTCGTGTCTTTCCAACGAGTTCAAACTATGCTTCTGTAGAGAAGAAATATAAAGATAATATTTATT
ACACAGCACCAGGTGCGTCTACATCAGCTATTGGTATTAATATTGACCGTCAAAGTTACAAGTATACAGCCAAAAAGACG
GATTCTGAAAAATCATCAACCAAGAAAGCCCTTCTAAACAAGGACTTCCGTCAAGCAATTAACTTTGCCATTGACCGTAA
GGCCTATCAATCACAAATTAACGGTAAAGATGGTGCAACTCTAGCTGTTCGTAACCTCTTTGTGCCTTCTGATTTTGTGA
GTGCAGGTGATAAGACCTTCGGAGATCTTGTAACAGAGAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTGAATTTT
GCTGATAGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCCAAGCAGA
TGGTGTTCAATTCCCAATTCATTTGGACCTTCCAGTTGACCAAAGCTCTAAACTTAATGTTGCCCAAGCCCAATCTTTGA
AACAAACCATTGAAAAATCATTGGGTAGCGAAAATGTTGTTATAGATATTAACCAATTGTCATCTGATGATTTGGAAAAT
GTAACACTTAATGCAGCCAACGCAGCAGCAGAAGACTGGGATATTTCAAATGGTGTCGCTTGGGCGCCAGATTACCAAGA
TCCATCAACCTACCTTGATATCTTTAAGACAACTTCAAGTGAAAACACTAAGGCTTTCATGGGTTATGATGATCCAAATA
ATGCGGCAGCAGCCCAAGTGGGACTCAAAGACTATGATGCCTTGCTGAATTCTGCAGCTTCAGAAACAAGTGACCTTAAT
GTTCGTTACGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGGTAATGG
TGCGGCACCAGCTATCTCACGCTTGACACCGTTTACCGGTGCTAGCATCCAGGTGGGTGATAAAAACTCATCAAACGACT
ACATCAAATATGTGAAACCACAAGAGAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAA
AAGAAAGAATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

99.087

100

0.991
  amiA3 Streptococcus thermophilus LMD-9

98.174

100

0.982
  amiA Streptococcus salivarius strain HSISS4

91.02

100

0.91