Detailed information NTG0142859

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: VT48_RS16385
• Genome accession: NZ_CP011150
• Coordinates: 3204996..3206171 (-)
• Length: 391 a.a.
• NCBI ID: WP_035389673.1
• Uniprot ID: A0AB39J225
• Organism: Bacillus altitudinis strain W3
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3199996..3211171

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VT48_RS16355 (VT48_16355)	-	3200172..3200591 (-)	420	WP_017357864.1	TIGR03826 family flagellar region protein	-
VT48_RS16360 (VT48_16360)	-	3200648..3201370 (-)	723	WP_390308590.1	ComF family protein	-
VT48_RS16365 (VT48_16365)	-	3201331..3201624 (-)	294	WP_035701582.1	late competence development ComFB family protein	-
VT48_RS16370 (VT48_16370)	comFA	3201689..3203068 (-)	1380	WP_142759403.1	DEAD/DEAH box helicase	Machinery gene
VT48_RS16375 (VT48_16375)	-	3203188..3204030 (-)	843	WP_024719242.1	DegV family protein	-
VT48_RS16380 (VT48_16380)	degU	3204242..3204931 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
VT48_RS16385 (VT48_16385)	degS	3204996..3206171 (-)	1176	WP_035389673.1	sensor histidine kinase	Regulator
VT48_RS16390 (VT48_16390)	-	3206393..3207061 (+)	669	WP_017357860.1	YigZ family protein	-
VT48_RS16395 (VT48_16395)	-	3207046..3208143 (+)	1098	WP_007499958.1	LCP family protein	-
VT48_RS16400 (VT48_16400)	-	3208181..3209248 (-)	1068	WP_007499956.1	glycosyltransferase family 4 protein	-
VT48_RS16405 (VT48_16405)	tuaH	3209383..3210630 (-)	1248	WP_046344590.1	teichuronic acid biosynthesis protein TuaH	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45509.22 Da
• Isoelectric Point: 5.8757

>NTDB_id=142859 VT48_RS16385 WP_035389673.1 3204996..3206171(-) (degS) [Bacillus altitudinis strain W3]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCIGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFVMIRVPLTLQNKIVK

Nucleotide

• Length: 1176 bp

>NTDB_id=142859 VT48_RS16385 WP_035389673.1 3204996..3206171(-) (degS) [Bacillus altitudinis strain W3]
ATGACAACACCTAAAATGGATCCGAAGTTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGTAAGGA
CGAAGTATTTAGAATCGGCGAACAGTCCCGTCAACAATATGAAAGCCTGGTAGAAGAGCTTAAGCAAATTAAACAGCAAG
TCAACGAAGTAATTGATTTTGGGGATAAACTAGAAGTACATACGAGACATGCTAGAAATCGTTTATCTGAAGTCAGCAGA
AACTTCAACAAATTCAGCGAAGAAGAAATACGAGAAGCCTATGAAAAAGCACATAACCTGCAAGTAGAATTGACCATGAT
CCAGCAGCGCGAAAAACAGCTGAGGGAAAGAAGAGATGATCTCGAAAGACGATTGTTAAGCTTACAAGACGTCATTGAAC
GTTCAGAAACGCTTGTGAGCCAGATCACGGTCGTCCTCAACTACTTGAACCAAGATTTACGTCAGGTCGGTGTTTTACTT
GAAGATGCTCAGGCAAAACAAGATTTTGGACTAAGAATTATTGAAGCCCAGGAAGAAGAGCGCAAAAGGGTATCACGAGA
AATCCATGATGGACCTGCTCAGATGCTGGCAAACGTGATGATGCGTTCAGAACTAATTGAACGGATTTTTAGAGACCGTG
GAACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTAAGACAGAATGTGCGAAATGCACTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCGATGGCTTTAGATGATTTGGGTCTCATTCCGACACTTCGAAAATACTTAAACACAATTGAAGAATA
TGATGGAAAAACCAAAATTACGTTCCAGTGCATAGGTGATACAGAAAGCGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TATTTAGACTAGCTCAAGAAGCTGTCACAAACTCTTTAAAGCATTCTGAAGCTGAAGAAATCTCTGTGAAGGTTGAAGTG
ACGAAAGACTTTGTAACCTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAGGATGTTAAAACAAATAAAAACAA
ATCCTTTGGGTTACTTGGTATGAAAGAGCGCGTAGACTTACTAGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCGTCATGATTAGAGTACCGTTAACATTACAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	85.455	98.465	0.841