Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   VT48_RS16370 Genome accession   NZ_CP011150
Coordinates   3201689..3203068 (-) Length   459 a.a.
NCBI ID   WP_142759403.1    Uniprot ID   -
Organism   Bacillus altitudinis strain W3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3196689..3208068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT48_RS16335 (VT48_16335) flgL 3196872..3197783 (-) 912 WP_008348257.1 flagellar hook-associated protein FlgL -
  VT48_RS16340 (VT48_16340) flgK 3197792..3199312 (-) 1521 WP_008348259.1 flagellar hook-associated protein FlgK -
  VT48_RS16345 (VT48_16345) - 3199328..3199810 (-) 483 WP_007499977.1 flagellar protein FlgN -
  VT48_RS16350 (VT48_16350) flgM 3199829..3200092 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  VT48_RS16355 (VT48_16355) - 3200172..3200591 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  VT48_RS16360 (VT48_16360) - 3200648..3201370 (-) 723 WP_390308590.1 ComF family protein -
  VT48_RS16365 (VT48_16365) - 3201331..3201624 (-) 294 WP_035701582.1 late competence development ComFB family protein -
  VT48_RS16370 (VT48_16370) comFA 3201689..3203068 (-) 1380 WP_142759403.1 DEAD/DEAH box helicase Machinery gene
  VT48_RS16375 (VT48_16375) - 3203188..3204030 (-) 843 WP_024719242.1 DegV family protein -
  VT48_RS16380 (VT48_16380) degU 3204242..3204931 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  VT48_RS16385 (VT48_16385) degS 3204996..3206171 (-) 1176 WP_035389673.1 sensor histidine kinase Regulator
  VT48_RS16390 (VT48_16390) - 3206393..3207061 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52572.18 Da        Isoelectric Point: 9.9737

>NTDB_id=142857 VT48_RS16370 WP_142759403.1 3201689..3203068(-) (comFA) [Bacillus altitudinis strain W3]
MNLEKAMELSHKLQSRHLLPVECQCTQSELEWLENQGFIHRTPAVDRVASGLICCRCGVSNKRYFALSPCETCKKECVYC
RSCIMLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLVVDEVDAFPYSMDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKRLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQVQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRTGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNSAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=142857 VT48_RS16370 WP_142759403.1 3201689..3203068(-) (comFA) [Bacillus altitudinis strain W3]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCACCTTCTTCCTGTTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTTATCCATAGAACACCTGCTGTCGATAGGGTGGCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGAATGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGTGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACAAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCACGGAATAAAATATGCGTTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCACCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCTTTTGATGTCCTCGTTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAA
CGGCTTCAGTTTGCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAGGATGTTGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAGATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGT
TCAGGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGGT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTCCAAATTTCTGGTAGAACAGGGAGACATCCAGATTTTTTTAACGGAGACGT
GTACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATTCAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(320-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.902

97.386

0.505

Multiple sequence alignment