Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   VT48_RS16380 Genome accession   NZ_CP011150
Coordinates   3204242..3204931 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain W3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3199242..3209931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT48_RS16345 (VT48_16345) - 3199328..3199810 (-) 483 WP_007499977.1 flagellar protein FlgN -
  VT48_RS16350 (VT48_16350) flgM 3199829..3200092 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  VT48_RS16355 (VT48_16355) - 3200172..3200591 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  VT48_RS16360 (VT48_16360) - 3200648..3201370 (-) 723 WP_390308590.1 ComF family protein -
  VT48_RS16365 (VT48_16365) - 3201331..3201624 (-) 294 WP_035701582.1 late competence development ComFB family protein -
  VT48_RS16370 (VT48_16370) comFA 3201689..3203068 (-) 1380 WP_142759403.1 DEAD/DEAH box helicase Machinery gene
  VT48_RS16375 (VT48_16375) - 3203188..3204030 (-) 843 WP_024719242.1 DegV family protein -
  VT48_RS16380 (VT48_16380) degU 3204242..3204931 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  VT48_RS16385 (VT48_16385) degS 3204996..3206171 (-) 1176 WP_035389673.1 sensor histidine kinase Regulator
  VT48_RS16390 (VT48_16390) - 3206393..3207061 (+) 669 WP_017357860.1 YigZ family protein -
  VT48_RS16395 (VT48_16395) - 3207046..3208143 (+) 1098 WP_007499958.1 LCP family protein -
  VT48_RS16400 (VT48_16400) - 3208181..3209248 (-) 1068 WP_007499956.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=142858 VT48_RS16380 WP_008348273.1 3204242..3204931(-) (degU) [Bacillus altitudinis strain W3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=142858 VT48_RS16380 WP_008348273.1 3204242..3204931(-) (degU) [Bacillus altitudinis strain W3]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment