Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VO64_RS04565 Genome accession   NZ_CP011117
Coordinates   976248..978473 (-) Length   741 a.a.
NCBI ID   WP_233518712.1    Uniprot ID   A0AAU8TFZ6
Organism   Pseudomonas synxantha strain LBUM223     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 971248..983473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO64_RS04530 (VO64_0856) murB 971617..972636 (-) 1020 WP_046068610.1 UDP-N-acetylmuramate dehydrogenase -
  VO64_RS04535 (VO64_0857) - 972633..973097 (-) 465 WP_046068611.1 low molecular weight protein-tyrosine-phosphatase -
  VO64_RS04540 (VO64_0858) kdsB 973097..973861 (-) 765 WP_046068612.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VO64_RS04545 (VO64_0859) - 973858..974043 (-) 186 WP_003174668.1 Trm112 family protein -
  VO64_RS04550 (VO64_0860) lpxK 974068..975078 (-) 1011 WP_046068613.1 tetraacyldisaccharide 4'-kinase -
  VO64_RS04555 (VO64_0861) - 975078..975506 (-) 429 WP_043046643.1 ExbD/TolR family protein -
  VO64_RS04560 (VO64_0862) exbB 975503..976138 (-) 636 WP_046068614.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VO64_RS04565 (VO64_0863) comA 976248..978473 (-) 2226 WP_233518712.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VO64_RS04570 (VO64_0864) - 978609..979124 (+) 516 WP_046068615.1 DUF2062 domain-containing protein -
  VO64_RS04575 (VO64_0865) - 979129..980487 (-) 1359 WP_046068616.1 sensor histidine kinase -
  VO64_RS04580 (VO64_0866) - 980474..981202 (-) 729 WP_046068617.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80223.12 Da        Isoelectric Point: 10.5541

>NTDB_id=142486 VO64_RS04565 WP_233518712.1 976248..978473(-) (comA) [Pseudomonas synxantha strain LBUM223]
MKTAMLALALGLLALRWLPALPSGAGVLGMLVLVLMLLPFRTYPVAFFLLGLSWACISAQWALDDRLRPVLDGQTRWVEG
RVIGLPQQTGTSVRFELADSRSRTARLPKRIRVSWHGGPTVNSGERWRLALTLKRPAGLLNFHGFDHEAWLLAQRIGATA
TVKDGERLAPARNAWRDAVRQRLLAVDAQGREAGLAALVLGDGSGLAPEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IALLARHGCWPRTWPWLPWACGLAFSGALAYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALNAVLALEPL
ASLQPGFWLSFAAVAALVLAFSVRLGPWSAWQVWTRPQWLIAIGLFPLLLVLGLPISLSAPVANLVAVPWISLVVLPLAL
LGTALLWVPLAGDALLWLAGGALDGLFKGLALLAVRLPAWIPAEVPLGYWLVSLAGAVILLLPKGLPFRLLGWPMLLLAV
FPPRESIPHGQVDVVQLDVGQGQALILRTRHHSLLYDAGPRSGPVDQGARVVLPSLKKLGVGQLDMMLLSHADADHAGGA
EAVARGLPVKRVVGGETEGLPGFLGTQACASGERWEWDGVAFELWQWAGASDGNPRSCVLQVEANGERLLLTGDIDRAAE
QAFLASPLAVPTDWLQAPHHGSRSSSSWPFLQRLAPASVLISRGRSNAFGHPHPQVMERYQALGSRVYDSAEQGAVRLRL
GTFLPPTVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=142486 VO64_RS04565 WP_233518712.1 976248..978473(-) (comA) [Pseudomonas synxantha strain LBUM223]
ATGAAAACAGCGATGTTGGCCTTGGCGCTGGGGCTACTGGCGTTGCGTTGGTTACCTGCGTTGCCGTCTGGCGCAGGGGT
GTTGGGCATGTTGGTGCTGGTGTTGATGCTGCTGCCTTTTCGCACCTATCCCGTGGCGTTCTTCCTGTTGGGTTTGAGTT
GGGCCTGTATCAGTGCGCAGTGGGCGCTGGATGACCGCTTGCGGCCGGTGCTGGATGGGCAGACGCGCTGGGTCGAAGGG
CGTGTCATCGGCCTGCCGCAACAGACGGGCACAAGCGTGCGCTTCGAACTGGCCGACAGCCGGTCGCGCACTGCGCGGCT
GCCCAAGCGCATCCGCGTGTCCTGGCATGGCGGGCCGACGGTTAACAGTGGGGAGCGCTGGCGCCTGGCATTGACGCTAA
AGCGGCCTGCCGGCCTGCTTAATTTCCACGGGTTTGACCATGAGGCCTGGTTGCTGGCCCAGCGTATCGGCGCCACCGCG
ACGGTAAAGGACGGCGAGCGCCTGGCGCCGGCCCGCAATGCCTGGCGCGATGCTGTCCGCCAGCGCCTGCTGGCCGTGGA
TGCCCAGGGCCGCGAGGCGGGCTTGGCTGCATTGGTACTGGGCGACGGTTCCGGGCTGGCGCCTGAGGATTGGCAGGTGT
TGCAGGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGGCAGCACATTGGCTTGCTGGCGGGGTTGATCTACGGCTTG
ATCGCTTTGTTGGCGCGCCATGGGTGCTGGCCCCGAACCTGGCCGTGGCTGCCGTGGGCGTGCGGCTTGGCATTTTCCGG
GGCGTTGGCTTATGGCCTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGGGCTTGCGTCATGGTGGGCCTGGTATTGCTGT
GGCGTTTGCGCTTTCGTCACTTGGGTGTTTGGTGGCCGTTGTTGCTGGCGCTGAACGCTGTGCTGGCGCTTGAGCCCCTG
GCCAGCCTGCAACCGGGGTTCTGGCTGTCGTTTGCGGCGGTCGCAGCGCTGGTCCTGGCGTTCAGCGTGCGCCTGGGGCC
GTGGAGCGCCTGGCAGGTCTGGACGCGTCCCCAGTGGTTGATCGCCATTGGCTTGTTCCCGTTGTTGCTGGTATTGGGTT
TGCCCATCAGCCTCAGTGCACCCGTGGCCAACCTGGTTGCGGTGCCGTGGATCAGCCTGGTGGTGCTGCCCTTGGCGCTG
CTGGGCACGGCGCTGCTGTGGGTGCCGTTGGCCGGTGACGCTTTGCTGTGGTTGGCGGGTGGCGCGCTGGACGGCTTGTT
CAAGGGCCTGGCGCTGCTTGCTGTGCGACTGCCTGCCTGGATACCGGCCGAAGTACCTTTGGGCTATTGGCTGGTGAGTC
TGGCCGGCGCAGTAATTTTGCTATTGCCCAAGGGGCTGCCGTTTCGGTTATTGGGCTGGCCCATGCTGTTGTTGGCGGTT
TTTCCACCCAGGGAGTCGATACCCCATGGGCAGGTGGACGTGGTGCAGCTGGATGTCGGCCAGGGGCAGGCCCTGATCCT
GCGCACTCGCCATCACTCCTTGCTTTATGACGCCGGGCCCCGGTCTGGGCCTGTCGACCAGGGGGCGCGGGTCGTCTTGC
CGTCGTTGAAAAAGCTGGGGGTAGGGCAGTTGGACATGATGCTGCTCAGCCATGCTGATGCCGATCATGCCGGCGGTGCG
GAGGCAGTGGCCCGGGGGCTGCCCGTCAAGCGCGTGGTGGGCGGCGAAACCGAAGGCCTGCCAGGGTTTCTCGGTACCCA
GGCCTGTGCCAGTGGCGAGCGGTGGGAGTGGGATGGCGTGGCCTTTGAACTGTGGCAATGGGCTGGTGCAAGTGATGGCA
ATCCGAGATCCTGCGTACTGCAGGTCGAGGCCAATGGCGAACGCCTGCTGCTCACCGGCGATATTGATCGCGCCGCCGAA
CAGGCATTCCTTGCCTCGCCGCTGGCGGTGCCGACCGATTGGCTGCAGGCCCCGCACCATGGCAGCCGCAGCTCTTCGTC
CTGGCCCTTCCTGCAGCGGCTGGCGCCGGCATCGGTGCTGATCTCCCGTGGGCGCAGCAATGCATTCGGCCATCCTCATC
CACAAGTAATGGAGCGCTATCAGGCCCTGGGCAGTCGGGTATATGACAGCGCTGAACAAGGCGCAGTGCGCCTGCGCCTG
GGAACGTTCCTTCCACCGACTGTTGCGCGCAGTCAACGCAGGTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.11

97.031

0.574
  comA Ralstonia pseudosolanacearum GMI1000

35.939

100

0.385

Multiple sequence alignment