Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VO64_RS04560 Genome accession   NZ_CP011117
Coordinates   975503..976138 (-) Length   211 a.a.
NCBI ID   WP_046068614.1    Uniprot ID   A0A0R3ANC2
Organism   Pseudomonas synxantha strain LBUM223     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 970503..981138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO64_RS04525 (VO64_0855) - 970871..971542 (+) 672 WP_046068609.1 Bax inhibitor-1/YccA family protein -
  VO64_RS04530 (VO64_0856) murB 971617..972636 (-) 1020 WP_046068610.1 UDP-N-acetylmuramate dehydrogenase -
  VO64_RS04535 (VO64_0857) - 972633..973097 (-) 465 WP_046068611.1 low molecular weight protein-tyrosine-phosphatase -
  VO64_RS04540 (VO64_0858) kdsB 973097..973861 (-) 765 WP_046068612.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VO64_RS04545 (VO64_0859) - 973858..974043 (-) 186 WP_003174668.1 Trm112 family protein -
  VO64_RS04550 (VO64_0860) lpxK 974068..975078 (-) 1011 WP_046068613.1 tetraacyldisaccharide 4'-kinase -
  VO64_RS04555 (VO64_0861) - 975078..975506 (-) 429 WP_043046643.1 ExbD/TolR family protein -
  VO64_RS04560 (VO64_0862) exbB 975503..976138 (-) 636 WP_046068614.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VO64_RS04565 (VO64_0863) comA 976248..978473 (-) 2226 WP_233518712.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VO64_RS04570 (VO64_0864) - 978609..979124 (+) 516 WP_046068615.1 DUF2062 domain-containing protein -
  VO64_RS04575 (VO64_0865) - 979129..980487 (-) 1359 WP_046068616.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22850.05 Da        Isoelectric Point: 7.3615

>NTDB_id=142485 VO64_RS04560 WP_046068614.1 975503..976138(-) (exbB) [Pseudomonas synxantha strain LBUM223]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMATNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=142485 VO64_RS04560 WP_046068614.1 975503..976138(-) (exbB) [Pseudomonas synxantha strain LBUM223]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACCTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAAAAACTCAAGGAACTGCGCGCCAATTCGCCGCTGGGTGAAATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCGGCTGCGCGGGTGATCCATGAGCTGGAGCGTTACAT
CAACGCCCTCGGTACCATCGCCGCCATGGCACCGCTGCTAGGCCTGCTCGGCACGGTGTTGGGCATGATCGACATCTTCA
GCTCGTTCATGGGCGCGGGCATGGCGACCAATGCGGCGGTACTTGCCGGCGGTATTTCCAAGGCCTTGATCACCACGGCT
GCGGGCCTGATGGTGGGGATTCCCGCGGTGTTCTTTCACCGCTTCCTGCAACGGCGCATCGATGAGCTGGTGGTCGGCAT
GGAACAGGAAGCTATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGGTCGAGGGTAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R3ANC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment