Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VK70_RS22075 Genome accession   NZ_CP011114
Coordinates   4734833..4735327 (-) Length   164 a.a.
NCBI ID   WP_025694542.1    Uniprot ID   A0A0F7FD60
Organism   Paenibacillus durus ATCC 35681     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4729833..4740327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK70_RS22060 (VK70_22065) opp4A 4730115..4731851 (-) 1737 WP_025694544.1 oligopeptide ABC transporter substrate-binding protein -
  VK70_RS22065 (VK70_22070) - 4732021..4733976 (-) 1956 WP_025694543.1 endonuclease MutS2 -
  VK70_RS22070 (VK70_22075) rpsR 4734539..4734811 (-) 273 WP_025692516.1 30S ribosomal protein S18 -
  VK70_RS22075 (VK70_22080) ssbA 4734833..4735327 (-) 495 WP_025694542.1 single-stranded DNA-binding protein Machinery gene
  VK70_RS22080 (VK70_22085) rpsF 4735378..4735662 (-) 285 WP_025694541.1 30S ribosomal protein S6 -
  VK70_RS22085 (VK70_22090) - 4735883..4736080 (+) 198 WP_025694540.1 YjzC family protein -
  VK70_RS22095 (VK70_22100) - 4736624..4737304 (-) 681 WP_025694539.1 ABC transporter permease -
  VK70_RS22100 (VK70_22105) - 4737297..4738217 (-) 921 WP_025694538.1 ABC transporter ATP-binding protein -
  VK70_RS22105 (VK70_22110) - 4738362..4739297 (-) 936 WP_025694537.1 sensor histidine kinase -
  VK70_RS22110 (VK70_22115) - 4739294..4740013 (-) 720 WP_025694536.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17943.77 Da        Isoelectric Point: 4.8192

>NTDB_id=142390 VK70_RS22075 WP_025694542.1 4734833..4735327(-) (ssbA) [Paenibacillus durus ATCC 35681]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQSRESGNASGGGDMPEPPSYGGGGRGNSGNSGFSRNNNQDPFSGDGKPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=142390 VK70_RS22075 WP_025694542.1 4734833..4735327(-) (ssbA) [Paenibacillus durus ATCC 35681]
ATGTTGAACCGTGTCATTCTGATCGGCCGATTGACCCGCGATCCTGAGCTGCGTTATACGCCTGCCGGCGTTGCCGTAAC
CCAGTTTACGCTTGCTGTAGACCGGCCTTTTACAAGCCAAGGCGGCGAACGTGAAGCGGATTTCATTCCGGTCGTAACCT
GGAGACAGCTGGCGGAGACCTGTGCCAATTACTTGCGCAAAGGTCGGCTGACGGCGGTAGAGGGACGCATCCAAGTACGG
AATTACGAGAATAACGAAGGCAAGCGTGTATACGTAACCGAAGTTATTGCCGATAATGTCCGGTTCCTGGAATCTTCCCA
GAGCCGTGAGAGCGGAAACGCATCCGGCGGGGGGGATATGCCCGAGCCACCTTCATACGGCGGCGGCGGACGCGGAAACA
GTGGAAATAGCGGTTTCTCGCGCAACAATAATCAGGATCCCTTTTCGGGCGACGGTAAGCCGATTGATATATCGGATGAT
GATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7FD60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.322

100

0.598
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.518
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.692

63.415

0.366

Multiple sequence alignment