Detailed information NTG0142336

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PCL1606_RS21070
• Genome accession: NZ_CP011110
• Coordinates: 4714279..4716510 (-)
• Length: 743 a.a.
• NCBI ID: WP_045884752.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain PCL1606
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4709279..4721510

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCL1606_RS21035 (PCL1606_43100)	murB	4709655..4710674 (-)	1020	WP_045884747.1	UDP-N-acetylmuramate dehydrogenase	-
PCL1606_RS21040 (PCL1606_43110)	-	4710671..4711135 (-)	465	WP_044461988.1	low molecular weight protein-tyrosine-phosphatase	-
PCL1606_RS21045 (PCL1606_43120)	kdsB	4711135..4711899 (-)	765	WP_044461987.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PCL1606_RS21050 (PCL1606_43130)	-	4711896..4712081 (-)	186	WP_007931663.1	Trm112 family protein	-
PCL1606_RS21055 (PCL1606_43140)	lpxK	4712106..4713116 (-)	1011	WP_045884750.1	tetraacyldisaccharide 4'-kinase	-
PCL1606_RS21060 (PCL1606_43150)	-	4713116..4713544 (-)	429	WP_044461984.1	ExbD/TolR family protein	-
PCL1606_RS21065 (PCL1606_43160)	exbB	4713541..4714176 (-)	636	WP_044461983.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PCL1606_RS21070 (PCL1606_43170)	comA	4714279..4716510 (-)	2232	WP_045884752.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PCL1606_RS21075 (PCL1606_43180)	-	4716658..4717173 (+)	516	WP_044461981.1	DUF2062 domain-containing protein	-
PCL1606_RS21080 (PCL1606_43190)	-	4717222..4718001 (-)	780	WP_044461980.1	ABC transporter permease	-
PCL1606_RS21085 (PCL1606_43200)	-	4717998..4718930 (-)	933	WP_044461979.1	ABC transporter ATP-binding protein	-
PCL1606_RS21090 (PCL1606_43210)	-	4719063..4719686 (-)	624	WP_045884755.1	glutathione S-transferase family protein	-
PCL1606_RS21095 (PCL1606_43220)	-	4719729..4720388 (-)	660	WP_044461977.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81549.82 Da
• Isoelectric Point: 10.7527

>NTDB_id=142336 PCL1606_RS21070 WP_045884752.1 4714279..4716510(-) (comA) [Pseudomonas chlororaphis strain PCL1606]
MRIAMLALATGLLTLRFLPALPAFGWLVALVVLALMLLPFRSYPVALFLFGLVWACASAQRALDDRLSEPLDGQTRWLEG
RVVGLPQQADGILRFELEDGRARRGPIPRRLRLAWYGGPPLHSGERWRLAVKLKRPVGLVNLQAFDHEAWLLAQRIGATG
TVKDGQRLVATEGGWRARIRQRLLQVEAHGRGGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPMRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILVFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPWLGEGLLWLAGGLLDLLFRGLGLLAARWPAWIAPDIPLWAWGISALGALLLLLPAGVPLRSLGWPMLLLMV
FPPKNTLPYGQAQVWQLDVGQGLAVVIRTREHALLYDAGPRFGDSDLGERVVLPSLRKLGIERLDLMLLSHADADHAGGA
DAVLRGLPVARLLGGDPEGLPAHLSAQPCASGEQWQWDGVRFSLWQWSQARTGNQKSCVLQVEARGERLLLTGDIDAQAE
RALLDTPLAVQTHWLQAPHHGSRSSSSVALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTTLYDSARHGALQVML
GTYAEPVSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=142336 PCL1606_RS21070 WP_045884752.1 4714279..4716510(-) (comA) [Pseudomonas chlororaphis strain PCL1606]
ATGCGTATCGCCATGCTGGCATTGGCAACGGGGTTGCTGACCCTGCGTTTCCTGCCGGCGCTGCCGGCCTTCGGATGGCT
GGTCGCGCTGGTGGTCCTGGCCCTGATGTTGCTGCCGTTTCGCAGCTATCCCGTGGCCTTGTTCCTGTTCGGGCTGGTCT
GGGCTTGCGCCAGCGCGCAACGCGCCCTGGATGATCGCCTGTCGGAACCGCTCGACGGCCAGACCCGCTGGCTCGAGGGC
CGGGTCGTGGGGCTGCCGCAACAGGCCGACGGCATCCTGCGTTTCGAATTGGAAGACGGGCGGGCGCGGCGCGGGCCGAT
TCCCCGGCGCCTGCGCCTGGCCTGGTACGGCGGGCCGCCGCTGCACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGCTCA
AGCGTCCGGTCGGTCTGGTCAACCTGCAGGCCTTCGATCATGAGGCCTGGCTGCTCGCCCAGCGCATCGGTGCCACGGGG
ACGGTCAAGGATGGGCAGCGGCTGGTCGCCACCGAGGGCGGCTGGCGGGCACGCATTCGCCAGCGCTTGCTGCAAGTCGA
GGCCCATGGGCGCGGCGGTGGCCTGGCGGCCCTGGTACTGGGCGACGGCTCGGGGCTCAGCCGGGAAGACTGGCGGGTGT
TGCAGGATACGGGGACCGTGCACCTGATGGTGATATCCGGCCAGCACATCAGTTTGCTGGCCGCCGTGATGTACGCCCTG
GTGGCCGGGCTGGCCCGTTACGGCCTGTGGCCCATGCGCTGGCCCTGGCTGCCCTGGGCGTGCGGGCTGGCCTTCGCCTC
GGCCCTGGGCTATGGCCTGCTCGCGGGGTTCGACGTGCCGGTGCGCCGCGCCTGCGTGATGGTCGCCCTGGTGTTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGGGCCTGGTGGCCATTCCTGCTGGCGCTGAATGCCGTGCTGCTATTCGAGCCGCTG
GCCAGCCTGCAACCGGGATTCTGGTTGTCCTTTACCGCGGTGGCGGTGTTGATTCTGGTTTTTGGCGGGCGCCTGGGCGG
CTGGCGCTGGTGGCAATCCTGGACCCGCATCCAGTGGCTGATCGCCATTGGCCTGTGCCCGGTACTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCCTTGGCCAATCTGTTGGCGGAGCCCTGGATCAGCCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGGACCTTGTTCCTGGCAGTGCCTTGGCTGGGCGAGGGGTTGTTGTGGCTGGCGGGCGGTTTGCTCGACCTGTTGTT
CCGCGGCCTTGGCCTGCTGGCGGCTCGATGGCCCGCCTGGATAGCCCCGGACATACCGCTCTGGGCCTGGGGCATCAGCG
CCCTGGGGGCCTTGCTGCTGTTGCTGCCCGCCGGTGTACCGCTGCGCTCGCTGGGCTGGCCGATGTTGCTGCTGATGGTG
TTTCCACCGAAAAACACGCTGCCTTATGGCCAGGCGCAGGTCTGGCAACTGGATGTCGGGCAGGGGCTGGCGGTGGTGAT
TCGCACCCGGGAGCACGCACTGCTGTACGACGCCGGCCCGCGTTTCGGCGATTCCGACCTGGGGGAGCGCGTGGTGCTGC
CGTCGTTGCGCAAGCTGGGCATCGAGCGCCTCGACCTGATGTTGCTCAGCCACGCCGATGCCGACCACGCCGGCGGGGCC
GACGCTGTCCTGCGTGGGCTGCCAGTGGCCAGGCTGCTGGGCGGCGACCCCGAGGGCTTGCCGGCCCATCTGTCGGCGCA
ACCTTGTGCCAGCGGCGAGCAGTGGCAATGGGACGGCGTGCGCTTTTCCCTGTGGCAATGGTCGCAGGCGCGGACCGGCA
ACCAGAAATCCTGCGTGCTGCAGGTCGAAGCCAGGGGCGAGCGCCTGCTGCTGACCGGGGATATCGACGCCCAGGCCGAG
CGCGCCCTGCTGGATACGCCGCTGGCCGTCCAGACCCACTGGCTGCAGGCTCCGCACCATGGCAGCCGCAGTTCGTCGTC
GGTGGCCCTGCTCAAGGCGCTGGCGCCCTCGGCGGTGCTGATTTCCCGCGGGCATGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCAGCAGGGCACCACGCTGTACGACAGCGCGCGGCATGGCGCGCTGCAAGTGATGCTG
GGTACCTATGCCGAACCCGTGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.395	96.77	0.623