Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PCL1606_RS21065 Genome accession   NZ_CP011110
Coordinates   4713541..4714176 (-) Length   211 a.a.
NCBI ID   WP_044461983.1    Uniprot ID   A0A0C5E5N8
Organism   Pseudomonas chlororaphis strain PCL1606     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4708541..4719176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCL1606_RS21030 (PCL1606_43090) - 4708931..4709401 (-) 471 WP_044461990.1 (2Fe-2S)-binding protein -
  PCL1606_RS21035 (PCL1606_43100) murB 4709655..4710674 (-) 1020 WP_045884747.1 UDP-N-acetylmuramate dehydrogenase -
  PCL1606_RS21040 (PCL1606_43110) - 4710671..4711135 (-) 465 WP_044461988.1 low molecular weight protein-tyrosine-phosphatase -
  PCL1606_RS21045 (PCL1606_43120) kdsB 4711135..4711899 (-) 765 WP_044461987.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PCL1606_RS21050 (PCL1606_43130) - 4711896..4712081 (-) 186 WP_007931663.1 Trm112 family protein -
  PCL1606_RS21055 (PCL1606_43140) lpxK 4712106..4713116 (-) 1011 WP_045884750.1 tetraacyldisaccharide 4'-kinase -
  PCL1606_RS21060 (PCL1606_43150) - 4713116..4713544 (-) 429 WP_044461984.1 ExbD/TolR family protein -
  PCL1606_RS21065 (PCL1606_43160) exbB 4713541..4714176 (-) 636 WP_044461983.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PCL1606_RS21070 (PCL1606_43170) comA 4714279..4716510 (-) 2232 WP_045884752.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PCL1606_RS21075 (PCL1606_43180) - 4716658..4717173 (+) 516 WP_044461981.1 DUF2062 domain-containing protein -
  PCL1606_RS21080 (PCL1606_43190) - 4717222..4718001 (-) 780 WP_044461980.1 ABC transporter permease -
  PCL1606_RS21085 (PCL1606_43200) - 4717998..4718930 (-) 933 WP_044461979.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23041.24 Da        Isoelectric Point: 8.1263

>NTDB_id=142335 PCL1606_RS21065 WP_044461983.1 4713541..4714176(-) (exbB) [Pseudomonas chlororaphis strain PCL1606]
MWELVKSGGWMMLPIILSSIVAVAIVAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAHVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=142335 PCL1606_RS21065 WP_044461983.1 4713541..4714176(-) (exbB) [Pseudomonas chlororaphis strain PCL1606]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGTCGCGGTGGCCATCGTCGC
CGAGCGCCTGTGGACCCTGCGGGCCAGCCGCGTCACGCCGCCGCATCTGCTGGGGCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTCAATAAGGACAAGCTCAAGGAACTGCGCGCCCATTCTCCCCTGGGAGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTACCT
CAACGCTCTGGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCCATGTGCTGGCGGGTGGTATTTCCAAGGCGCTGATCACCACCGCG
TCCGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGCTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C5E5N8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863

Multiple sequence alignment