Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AzCIB_RS19855 Genome accession   NZ_CP011072
Coordinates   4431075..4432466 (-) Length   463 a.a.
NCBI ID   WP_050417482.1    Uniprot ID   -
Organism   Azoarcus sp. CIB     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4426075..4437466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AzCIB_RS19815 (AzCIB_3967) - 4426351..4426653 (+) 303 WP_050417475.1 hypothetical protein -
  AzCIB_RS19820 (AzCIB_3968) - 4426650..4427198 (+) 549 WP_050417476.1 hypothetical protein -
  AzCIB_RS19825 (AzCIB_3969) - 4427302..4427565 (-) 264 WP_050417477.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AzCIB_RS19830 (AzCIB_3970) - 4427552..4427785 (-) 234 WP_050417478.1 ribbon-helix-helix protein, CopG family -
  AzCIB_RS19835 (AzCIB_3971) pilA2 4428143..4428571 (+) 429 WP_050418476.1 pilin Machinery gene
  AzCIB_RS19840 (AzCIB_3972) - 4428997..4430100 (+) 1104 WP_050417479.1 transposase -
  AzCIB_RS19845 (AzCIB_3973) - 4430200..4430685 (-) 486 WP_050417480.1 hypothetical protein -
  AzCIB_RS19850 (AzCIB_3974) - 4430682..4430981 (-) 300 WP_050417481.1 nucleotidyltransferase domain-containing protein -
  AzCIB_RS19855 (AzCIB_3975) pilR 4431075..4432466 (-) 1392 WP_050417482.1 sigma-54 dependent transcriptional regulator Regulator
  AzCIB_RS19860 (AzCIB_3976) - 4432463..4434031 (-) 1569 WP_157058538.1 ATP-binding protein -
  AzCIB_RS19865 (AzCIB_3977) - 4434034..4434288 (-) 255 WP_050417483.1 PP0621 family protein -
  AzCIB_RS19870 (AzCIB_3978) - 4434342..4435499 (-) 1158 WP_050418478.1 pyridoxal phosphate-dependent aminotransferase -
  AzCIB_RS19875 (AzCIB_3979) mtnA 4435567..4436634 (+) 1068 WP_050417484.1 S-methyl-5-thioribose-1-phosphate isomerase -
  AzCIB_RS19880 (AzCIB_3980) - 4436631..4437284 (+) 654 WP_050417485.1 class II aldolase/adducin family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 50648.92 Da        Isoelectric Point: 5.8151

>NTDB_id=142037 AzCIB_RS19855 WP_050417482.1 4431075..4432466(-) (pilR) [Azoarcus sp. CIB]
MNTPERRNRPAGIDVLVVDDEEDIREVLELSLLRMGLACDTAGTVEEARRLLGERNYRLCLTDMRLPDGDGLELVAHIQS
HAPGLPVAVITAFGSIETAIRALKCGAFDFVTKPVELKALRELVSHALKLQSAAAPTPGAGGTARTLIGSSPALEHLRAQ
IAKLARNQAPVFIQGESGTGKEVIARLIHDLGPRASAPFVPVNCGAIPPELMESEFFGHRKGAFTGAVFDKDGLFQAARG
GTLFLDEVADLPLAMQVKLLRAIQERAVRAVGAHTEESVDVRILSASHRDLAQLVADGKFRQDLYFRINVITLRVPPLRE
RPEDVPELAGHILARLAERDGVPPHRLAPDASAALKQHAFPGNVRELENLLERACALCDGDEIRAGDIDLHPTEGIAQPF
RALGAADSCVVDPDVDSNEDGEDERVRILRMLDETRWNRSEAARRLGMTLRQLRYRLQKWGME

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=142037 AzCIB_RS19855 WP_050417482.1 4431075..4432466(-) (pilR) [Azoarcus sp. CIB]
ATGAACACACCCGAACGACGCAACCGCCCTGCCGGAATCGACGTCCTGGTCGTCGACGACGAGGAGGACATCCGCGAAGT
TCTGGAGCTCTCGCTGCTGCGCATGGGGCTCGCGTGCGATACGGCCGGGACCGTTGAGGAGGCGCGTCGCCTGCTCGGCG
AGAGAAACTACCGCCTGTGCCTCACCGACATGCGCCTGCCCGACGGTGACGGCCTGGAGCTCGTCGCGCACATCCAGTCG
CACGCTCCGGGCCTGCCCGTCGCGGTGATCACCGCCTTCGGCAGCATCGAAACCGCGATCCGCGCGCTGAAGTGCGGCGC
CTTCGATTTCGTCACCAAACCCGTTGAACTCAAGGCCCTGCGCGAGCTGGTCAGCCACGCGCTGAAACTGCAGAGCGCGG
CGGCACCGACGCCCGGCGCCGGCGGCACGGCGCGCACGCTCATCGGCAGCTCCCCGGCACTGGAGCACCTGCGTGCGCAG
ATCGCCAAGCTCGCGCGCAACCAGGCGCCGGTCTTCATCCAGGGCGAATCCGGCACCGGCAAGGAAGTGATCGCCCGCCT
CATCCACGATCTGGGGCCGCGCGCGTCGGCTCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCGCCCGAACTCATGGAAA
GCGAGTTCTTCGGTCACCGCAAGGGCGCCTTCACCGGCGCCGTATTCGACAAGGACGGCCTCTTCCAGGCTGCGCGCGGC
GGCACCCTGTTCCTCGACGAGGTCGCCGACCTGCCGCTGGCGATGCAGGTGAAGCTGCTGCGCGCGATTCAGGAGCGTGC
GGTGCGCGCCGTCGGTGCCCACACAGAAGAATCCGTCGACGTCCGCATCCTGTCCGCCTCGCACCGCGACCTCGCGCAAC
TCGTCGCCGACGGCAAGTTCCGCCAGGACCTCTACTTCCGCATCAACGTCATCACGCTGCGGGTGCCCCCGCTGCGCGAA
CGCCCGGAGGACGTCCCCGAGCTTGCCGGGCACATCCTCGCGCGGCTCGCCGAGCGCGACGGCGTCCCGCCGCACCGCCT
GGCGCCCGACGCCAGCGCCGCGCTGAAGCAGCACGCCTTTCCCGGCAACGTTCGCGAACTCGAAAACCTGCTCGAACGCG
CCTGCGCGCTATGCGACGGCGACGAAATCCGTGCCGGCGACATCGACCTGCATCCGACCGAAGGCATTGCCCAGCCTTTC
CGGGCACTCGGGGCGGCGGACTCGTGCGTCGTTGATCCGGATGTCGATAGCAACGAGGACGGCGAGGACGAGCGCGTACG
GATTCTGCGGATGCTCGACGAGACCCGCTGGAACCGCTCCGAGGCTGCGCGGCGCCTGGGGATGACACTCAGGCAGTTGC
GCTACCGCTTGCAGAAGTGGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(424-460)

Sigma-54 interaction domain (Sigma54_activat)

(147-313)

Response regulator receiver domain (Response_reg)

(15-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.161

96.76

0.592
  pilR Acinetobacter baumannii strain A118

49.351

99.784

0.492

Multiple sequence alignment