Detailed information NTG0142023

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: AzCIB_RS03170
• Genome accession: NZ_CP011072
• Coordinates: 736430..737641 (+)
• Length: 403 a.a.
• NCBI ID: WP_050414555.1
• Uniprot ID: -
• Organism: Azoarcus sp. CIB
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 731430..742641

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AzCIB_RS03155 (AzCIB_0635)	gmhB	733223..733762 (+)	540	WP_050414552.1	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	-
AzCIB_RS03160 (AzCIB_0636)	-	733771..734541 (+)	771	WP_050414553.1	lysophospholipid acyltransferase family protein	-
AzCIB_RS03165 (AzCIB_0637)	-	734618..736303 (+)	1686	WP_232299344.1	histidine kinase	-
AzCIB_RS03170 (AzCIB_0638)	pilU	736430..737641 (+)	1212	WP_050414555.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
AzCIB_RS03175 (AzCIB_0639)	-	737786..738352 (-)	567	WP_050414556.1	phasin family protein	-
AzCIB_RS03180 (AzCIB_0640)	-	738682..739458 (-)	777	WP_050414557.1	enoyl-CoA hydratase	-
AzCIB_RS03185 (AzCIB_0641)	lptA	739488..740036 (-)	549	WP_198149608.1	lipopolysaccharide transport periplasmic protein LptA	-
AzCIB_RS03190 (AzCIB_0642)	lptC	740033..740614 (-)	582	WP_050414558.1	LPS export ABC transporter periplasmic protein LptC	-
AzCIB_RS03195 (AzCIB_0643)	-	740664..741659 (-)	996	WP_050414559.1	KpsF/GutQ family sugar-phosphate isomerase	-

Sequence

Protein

• Length: 403 a.a.
• Molecular weight: 44638.10 Da
• Isoelectric Point: 6.3217

>NTDB_id=142023 AzCIB_RS03170 WP_050414555.1 736430..737641(+) (pilU) [Azoarcus sp. CIB]
MSSALGIEEARSYMHRLLNAMHQMDGSDLFISVDFPPTVKAHGTMKALSQQRLTPDITRSLALSLMNDRQRAEFEAEMEC
NFAISIPGVCRFRVNVFVQQQHAGMVIRTIASEIPSLAKLGLPEVLKEIILTKRGLVLVVGGTGSGKSTTLAAMIDHRNS
TGPGHIITVEDPVEYVHRNKQCLVTHREVGVDTHSWEHALKNTLRQAPDVILIGEIRDRETMEHAIAFAETGHLCLGTLH
ANNANQTIDRIVNFFPEERRNQLLMDLSSNLRAIVSQRLIRTEDGKGRKAAIEILLNTPTIAEMIFKGQFQSIKEIMAKS
RELGMCTFDQALFDLYDAGFVSYEEAIRNADSTNELRLQIKLKAERGQPKTSAATELSLSIEEQKEEEEVVEGAAGPGAK
VAG

Nucleotide

• Length: 1212 bp

>NTDB_id=142023 AzCIB_RS03170 WP_050414555.1 736430..737641(+) (pilU) [Azoarcus sp. CIB]
ATGTCGTCCGCCCTGGGCATAGAAGAAGCCCGCAGCTACATGCACAGGCTGCTCAACGCGATGCACCAGATGGACGGGTC
CGACCTGTTCATCTCGGTGGATTTCCCGCCGACCGTAAAGGCGCATGGCACGATGAAGGCGCTCAGTCAGCAGCGGCTGA
CGCCCGACATCACGCGCTCGCTGGCGCTGAGCCTGATGAATGATCGCCAACGCGCCGAGTTCGAGGCCGAGATGGAGTGC
AATTTCGCGATCTCCATCCCCGGCGTGTGCCGCTTCCGCGTGAACGTCTTCGTCCAGCAGCAGCACGCCGGCATGGTCAT
CCGCACCATCGCGTCCGAGATCCCGTCGCTCGCCAAGCTCGGCCTGCCGGAAGTGCTCAAGGAAATCATCCTGACCAAGC
GCGGCCTCGTGCTGGTCGTGGGTGGCACCGGCTCAGGCAAGTCGACGACGCTCGCGGCGATGATCGATCACCGCAACAGC
ACCGGGCCGGGGCACATCATCACCGTCGAGGATCCGGTCGAATACGTCCATCGCAACAAGCAGTGTCTCGTCACGCACCG
CGAGGTCGGCGTCGACACGCACTCGTGGGAACATGCGCTGAAAAACACGTTGCGCCAGGCACCCGACGTGATCCTGATCG
GCGAGATCCGCGACCGCGAGACGATGGAGCACGCGATCGCCTTCGCCGAGACCGGCCACCTGTGTCTCGGCACGCTGCAC
GCGAACAACGCGAACCAGACGATCGACCGGATCGTGAATTTCTTCCCCGAGGAACGGCGCAACCAGCTGCTCATGGATCT
GTCGTCGAACCTGCGCGCGATCGTGTCGCAGCGCCTGATCCGCACCGAAGACGGAAAGGGACGCAAGGCGGCGATCGAGA
TCCTGCTCAACACGCCGACGATCGCTGAGATGATCTTCAAGGGTCAGTTCCAGTCCATCAAGGAGATCATGGCCAAGTCG
CGCGAACTGGGCATGTGTACCTTCGATCAGGCATTGTTCGACCTGTACGACGCCGGCTTCGTCAGCTATGAGGAGGCCAT
CCGCAACGCAGACTCGACCAACGAGCTGCGCCTGCAGATCAAGCTGAAGGCCGAGCGCGGCCAGCCCAAGACCTCTGCCG
CCACGGAGCTGAGCCTGTCGATCGAAGAACAGAAAGAAGAGGAAGAAGTGGTCGAGGGCGCCGCAGGTCCGGGTGCCAAG
GTCGCCGGCTAG

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (92-282)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	56.369	91.563	0.516
pilU	Acinetobacter baylyi ADP1	54.52	87.841	0.479
pilU	Vibrio cholerae strain A1552	50.138	90.074	0.452