Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD1   Type   Regulator
Locus tag   AU077_RS00700 Genome accession   NZ_CP013688
Coordinates   136809..138119 (+) Length   436 a.a.
NCBI ID   WP_058621373.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain ICDDRB-NRC-S1     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 131809..143119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU077_RS00675 (AU077_00675) - 133642..133842 (+) 201 WP_058621369.1 hypothetical protein -
  AU077_RS00690 (AU077_00690) - 135730..136056 (+) 327 WP_058621371.1 LytTR family DNA-binding domain-containing protein -
  AU077_RS00695 (AU077_00695) comE/comE1 136073..136804 (+) 732 WP_058621372.1 response regulator transcription factor Regulator
  AU077_RS00700 (AU077_00700) comD/comD1 136809..138119 (+) 1311 WP_058621373.1 sensor histidine kinase Regulator
  AU077_RS11135 comC/comC1 138137..138277 (-) 141 WP_014295304.1 hypothetical protein Regulator
  AU077_RS00705 (AU077_00705) - 138578..138877 (+) 300 WP_058621374.1 DUF3884 family protein -
  AU077_RS00710 (AU077_00710) - 138887..139036 (+) 150 WP_039671232.1 hypothetical protein -
  AU077_RS00715 (AU077_00715) - 139048..139359 (+) 312 WP_039671231.1 bacteriocin immunity protein -
  AU077_RS11140 (AU077_00720) - 139631..139801 (+) 171 WP_058621375.1 hypothetical protein -
  AU077_RS00725 (AU077_00725) comD/comD3 139933..140247 (+) 315 WP_058621376.1 GHKL domain-containing protein Regulator
  AU077_RS00730 (AU077_00730) - 140377..140634 (+) 258 WP_014295297.1 hypothetical protein -
  AU077_RS00745 (AU077_00745) rsgA 141076..141948 (+) 873 WP_014295296.1 ribosome small subunit-dependent GTPase A -
  AU077_RS00750 (AU077_00750) rpe 141955..142614 (+) 660 WP_058621377.1 ribulose-phosphate 3-epimerase -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 50940.86 Da        Isoelectric Point: 5.6978

>NTDB_id=141907 AU077_RS00700 WP_058621373.1 136809..138119(+) (comD/comD1) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MLDYLFLCLIVNSFILYIYSQVRGEKLNFFEILIAVAVFVWVDHAWFYFIICNFIILILLSYLKNRSLPLTLHVFYGVFP
WIVESVFRRLIGFFMLPIIGLNYLNVGENNIIFMCVELTSLMLYILLVKISKFDFQRFIEMVSVSILRFFLIVTDVTMIA
FYVAIEFLTGMEVYGGVPNLVYRQWLVALYFTFFILMLFYMNRSYQNWLEKEVSLAREQELHSLSVYSKQIEGLYEELRA
FRHDYANILVSLKEGIDQNDMDMVRNIYNSVLEESGHLVQNKKFDIGRLINIDNDAIKSVLSAKFLEAESYHIAVQLEVK
DKIGLPEIPLLDYVRLLSILCDNAIEAAMEAENPAMIIACFYQGDDYLLVIDNTTKEERVPVELIYQKNYSSKGFGRGVG
LKTVNQMLKKYPNMSVQTSSKNYHFRQTICIKKSFD

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=141907 AU077_RS00700 WP_058621373.1 136809..138119(+) (comD/comD1) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
ATGTTGGATTACTTATTTCTTTGCTTAATAGTAAATTCGTTTATTCTATACATTTATTCTCAAGTCAGAGGTGAGAAGTT
AAACTTTTTTGAGATATTAATAGCAGTTGCTGTTTTTGTATGGGTTGATCATGCTTGGTTTTATTTTATTATATGTAATT
TTATTATTCTGATATTGTTATCTTATCTAAAAAATAGGTCTTTACCACTAACACTTCATGTCTTTTATGGTGTTTTTCCT
TGGATTGTTGAGAGTGTTTTTAGGCGTTTGATAGGTTTCTTTATGCTTCCAATCATTGGTTTAAATTATCTGAATGTAGG
TGAAAATAATATAATTTTTATGTGTGTCGAGCTAACATCCCTAATGCTTTATATTTTGCTAGTGAAAATTTCTAAATTTG
ATTTTCAAAGATTTATAGAAATGGTTAGTGTCAGCATATTAAGATTTTTTCTTATTGTTACTGATGTAACGATGATTGCT
TTTTATGTGGCTATTGAATTTCTAACAGGTATGGAAGTTTATGGTGGTGTCCCAAACTTGGTTTATCGCCAATGGTTGGT
GGCTCTCTATTTCACTTTCTTCATTTTAATGCTGTTTTATATGAATCGCTCTTATCAAAATTGGCTTGAGAAAGAAGTAT
CATTAGCGCGAGAACAAGAACTGCATTCTTTGTCGGTATATAGCAAGCAAATCGAAGGCTTATATGAAGAACTAAGAGCT
TTTCGTCATGATTATGCCAATATTTTAGTGAGTTTAAAAGAAGGAATCGACCAAAATGATATGGATATGGTCAGAAATAT
TTACAATTCTGTATTAGAAGAGTCAGGGCACCTTGTTCAGAATAAAAAATTTGATATTGGACGATTGATTAATATTGACA
ATGATGCAATAAAAAGTGTATTATCAGCAAAGTTTTTAGAGGCTGAGTCTTATCACATTGCCGTTCAATTAGAGGTTAAA
GATAAGATCGGACTTCCTGAGATACCATTACTAGACTATGTGCGACTTTTGTCGATTTTGTGTGATAATGCGATTGAAGC
AGCTATGGAAGCTGAAAATCCTGCCATGATTATTGCTTGTTTCTATCAAGGGGATGACTATTTACTAGTTATCGATAACA
CTACAAAAGAAGAACGAGTTCCTGTGGAATTGATTTATCAGAAGAATTATTCAAGTAAGGGCTTTGGACGAGGTGTTGGT
CTTAAAACGGTTAACCAGATGTTGAAAAAGTATCCAAATATGTCGGTACAAACATCAAGCAAAAATTATCATTTCAGACA
AACAATATGTATAAAAAAATCATTCGACTAA

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(331-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD1 Streptococcus equinus JB1

75

53.211

0.399

Multiple sequence alignment