Detailed information NTG0141598

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PISS_RS13705
• Genome accession: NZ_CP011030
• Coordinates: 2957875..2958786 (+)
• Length: 303 a.a.
• NCBI ID: WP_058155277.1
• Uniprot ID: -
• Organism: Pseudoalteromonas issachenkonii strain KMM 3549
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2952875..2963786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PISS_RS13685 (PISS_a3066)	ampD	2953850..2954395 (-)	546	WP_058155274.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
PISS_RS13690 (PISS_a3067)	nadC	2954587..2955432 (+)	846	WP_058155275.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PISS_RS13695 (PISS_a3068)	-	2955940..2956374 (+)	435	WP_157066903.1	pilin	-
PISS_RS13700 (PISS_a3070)	pilC	2956448..2957677 (+)	1230	WP_058155276.1	type II secretion system F family protein	Machinery gene
PISS_RS13705 (PISS_a3071)	pilD	2957875..2958786 (+)	912	WP_058155277.1	A24 family peptidase	Machinery gene
PISS_RS13710 (PISS_a3072)	coaE	2958789..2959418 (+)	630	WP_058155278.1	dephospho-CoA kinase	-
PISS_RS13715 (PISS_a3073)	pilB	2959552..2961228 (+)	1677	WP_024601729.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PISS_RS13720 (PISS_a3074)	yacG	2961293..2961523 (+)	231	WP_024601728.1	DNA gyrase inhibitor YacG	-
PISS_RS13725 (PISS_a3076)	-	2961583..2962071 (-)	489	WP_036956691.1	Spy/CpxP family protein refolding chaperone	-
PISS_RS13730 (PISS_a3078)	-	2962239..2962928 (+)	690	WP_016899750.1	response regulator transcription factor	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 33399.74 Da
• Isoelectric Point: 7.2372

>NTDB_id=141598 PISS_RS13705 WP_058155277.1 2957875..2958786(+) (pilD) [Pseudoalteromonas issachenkonii strain KMM 3549]
MQSLFIDITAAMQNHLWFYLTTIGLVSLCIGSFLNVVIYRLPLMMQKEWQTECRLLLADELTSPKAKQTTEHTTDTFNLV
QPNSCCPKCKAAIKPWQNIPIISWLLLKGKCATCNNPISVRYPLVEAITAILSLVVAHTFGATEQALLYIVVTWALVALT
FIDIDHMLLPDQLTLPLLWLALIASVMGHTIAPSDAIIGAACGYLSLWSVFWLFKLITGKEGMGYGDFKLLAVFGALLGW
QSLLTIILLSSVVGAVIGIALLSIQGKDKATPIPFGPYLAIAGWITMLWGTQLQNSYFNFIGY

Nucleotide

• Length: 912 bp

>NTDB_id=141598 PISS_RS13705 WP_058155277.1 2957875..2958786(+) (pilD) [Pseudoalteromonas issachenkonii strain KMM 3549]
ATGCAAAGTCTTTTTATTGATATCACCGCCGCGATGCAAAACCATTTATGGTTTTACTTAACCACTATTGGACTGGTGAG
TTTATGTATTGGTAGCTTTTTAAATGTGGTGATATATCGCTTACCGCTGATGATGCAAAAAGAATGGCAAACTGAATGCC
GCTTATTATTAGCCGATGAACTAACCAGCCCAAAGGCTAAACAGACCACTGAACACACTACTGACACGTTTAACTTAGTT
CAACCCAATTCATGTTGCCCAAAGTGCAAAGCGGCCATTAAACCGTGGCAAAATATCCCTATAATTAGCTGGTTATTATT
AAAAGGTAAATGCGCAACCTGTAACAACCCAATATCAGTACGTTACCCTCTCGTTGAGGCCATTACCGCTATTTTAAGTT
TAGTGGTTGCCCACACCTTTGGCGCTACAGAGCAGGCTTTATTGTACATTGTAGTTACTTGGGCGTTGGTAGCACTGACT
TTTATTGATATTGATCACATGCTACTGCCGGACCAGCTTACTTTGCCACTTTTATGGTTAGCACTAATAGCCTCAGTTAT
GGGTCATACCATTGCCCCTAGCGATGCCATTATTGGCGCAGCATGTGGCTATTTAAGCTTATGGAGTGTGTTTTGGTTGT
TTAAATTAATAACCGGCAAAGAAGGCATGGGCTATGGCGACTTTAAATTACTTGCGGTGTTTGGCGCATTGCTAGGTTGG
CAATCGTTATTGACCATTATTTTGCTCTCAAGCGTGGTTGGCGCAGTAATTGGCATTGCTCTACTGAGCATTCAAGGTAA
AGACAAAGCAACCCCTATTCCTTTTGGCCCTTATTTAGCAATAGCCGGTTGGATCACTATGCTATGGGGAACGCAACTGC
AAAACAGCTATTTTAATTTCATTGGCTACTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-140)

• Type IV leader peptidase family (Peptidase_A24) (151-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	50.853	96.7	0.492
pilD	Vibrio cholerae strain A1552	51.568	94.719	0.488
pilD	Acinetobacter nosocomialis M2	50.512	96.7	0.488
pilD	Vibrio campbellii strain DS40M4	50.859	96.04	0.488
pilD	Neisseria gonorrhoeae MS11	45.149	88.449	0.399