Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   UP12_RS19075 Genome accession   NZ_CP011007
Coordinates   3770298..3770843 (-) Length   181 a.a.
NCBI ID   WP_003215157.1    Uniprot ID   -
Organism   Bacillus pumilus strain SH-B9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3765298..3775843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP12_RS19050 (UP12_19070) - 3765560..3766168 (-) 609 WP_058013193.1 alpha/beta hydrolase -
  UP12_RS19055 (UP12_19075) - 3766165..3767136 (-) 972 WP_061410192.1 ring-cleaving dioxygenase -
  UP12_RS19060 (UP12_19080) - 3767328..3768845 (-) 1518 WP_061410193.1 ABC transporter permease/substrate-binding protein -
  UP12_RS19065 (UP12_19085) - 3768838..3769803 (-) 966 WP_061410194.1 ABC transporter ATP-binding protein -
  UP12_RS19070 (UP12_19090) rpsR 3770014..3770253 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  UP12_RS19075 (UP12_19095) ssbA 3770298..3770843 (-) 546 WP_003215157.1 single-stranded DNA-binding protein SsbA Machinery gene
  UP12_RS19080 (UP12_19100) rpsF 3770880..3771167 (-) 288 WP_003215073.1 30S ribosomal protein S6 -
  UP12_RS19085 (UP12_19105) ychF 3771276..3772376 (-) 1101 WP_061410195.1 redox-regulated ATPase YchF -
  UP12_RS19090 (UP12_19110) - 3772593..3772799 (-) 207 WP_058013188.1 DUF951 domain-containing protein -
  UP12_RS19095 (UP12_19115) - 3773094..3774413 (+) 1320 WP_061410196.1 hypothetical protein -
  UP12_RS19100 (UP12_19120) - 3774429..3774839 (+) 411 WP_044139037.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19706.26 Da        Isoelectric Point: 4.6109

>NTDB_id=141358 UP12_RS19075 WP_003215157.1 3770298..3770843(-) (ssbA) [Bacillus pumilus strain SH-B9]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQSNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=141358 UP12_RS19075 WP_003215157.1 3770298..3770843(-) (ssbA) [Bacillus pumilus strain SH-B9]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGTAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAGCAACCAACAAAATCGTAATCAGGGAAATAGCTTC
AATGATGACCCATTTGCGAATGACGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.53

100

0.845
  ssb Latilactobacillus sakei subsp. sakei 23K

55.08

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376

Multiple sequence alignment