Detailed information NTG0141314

Bioinformatically predicted

Overview

• Name: med
• Type: Regulator
• Locus tag: UP12_RS05625
• Genome accession: NZ_CP011007
• Coordinates: 1167707..1168669 (+)
• Length: 320 a.a.
• NCBI ID: WP_058014312.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain SH-B9
• Function: regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 1162707..1173669

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UP12_RS05595 (UP12_05595)	argF	1163036..1163986 (+)	951	WP_058014316.1	ornithine carbamoyltransferase	-
UP12_RS05600 (UP12_05600)	-	1164089..1164268 (+)	180	WP_003211282.1	YjzC family protein	-
UP12_RS05605 (UP12_05605)	-	1164438..1165703 (+)	1266	WP_058014315.1	MFS transporter	-
UP12_RS05610 (UP12_05610)	-	1165819..1166013 (-)	195	WP_003211779.1	YjzD family protein	-
UP12_RS05615 (UP12_05615)	-	1166225..1166965 (+)	741	WP_058014314.1	hypothetical protein	-
UP12_RS05620 (UP12_05620)	-	1167041..1167616 (+)	576	WP_058014313.1	hypothetical protein	-
UP12_RS05625 (UP12_05625)	med	1167707..1168669 (+)	963	WP_058014312.1	BMP family ABC transporter substrate-binding protein	Regulator
UP12_RS05630 (UP12_05630)	comZ	1168680..1168877 (+)	198	WP_058014495.1	ComZ family protein	Regulator
UP12_RS05635 (UP12_05635)	-	1168888..1169121 (-)	234	WP_058014311.1	hypothetical protein	-
UP12_RS05640 (UP12_05640)	-	1169291..1170229 (+)	939	WP_012009552.1	beta-ketoacyl-ACP synthase III	-
UP12_RS05645 (UP12_05645)	fabF	1170251..1171492 (+)	1242	WP_058014310.1	beta-ketoacyl-ACP synthase II	-
UP12_RS05650 (UP12_05650)	-	1171570..1172373 (+)	804	WP_058014309.1	DUF2268 domain-containing protein	-
UP12_RS05655 (UP12_05655)	-	1172534..1173514 (+)	981	WP_058014308.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 35619.54 Da
• Isoelectric Point: 5.4531

>NTDB_id=141314 UP12_RS05625 WP_058014312.1 1167707..1168669(+) (med) [Bacillus pumilus strain SH-B9]
MKYQRLVMIFSFLLLLSACSQAPLKGQIEKVGLLVPDTINDQVWGTKGYKGLLNIQSTFGVDVYYKEGMVDKEKIVDAIE
EFHKKGVNLIIGHGNEYSEIFNLISEDYPKTQFITVNGNKPQADNVANVTFKGEAMGFFGGMTAAHMSKSKKIGILATYD
WQSEVDGFIKGAKYQDEHVQVLAEFVENWDDADKAVELYQKLKKQGVDVVYPAGDGYNIPVIEQIKADNLSAIGYVTDQS
NLGSHTVLTSTVQHVDKAYGIIAKKFNEGKLNAQGEYSFDFKEGVIEMGKFSSTIDRAFLKDIESDIATYKKTGKLPNEK

Nucleotide

• Length: 963 bp

>NTDB_id=141314 UP12_RS05625 WP_058014312.1 1167707..1168669(+) (med) [Bacillus pumilus strain SH-B9]
ATGAAGTATCAGCGGCTTGTCATGATCTTTTCGTTCCTTCTCCTATTATCTGCCTGCTCACAGGCACCTTTAAAAGGACA
GATTGAGAAGGTGGGTTTACTCGTCCCCGATACTATTAATGATCAAGTTTGGGGAACGAAAGGTTATAAAGGCTTATTAA
ATATTCAATCAACATTTGGTGTAGATGTTTATTATAAGGAAGGAATGGTCGACAAAGAGAAAATCGTTGATGCCATTGAA
GAATTTCACAAAAAAGGAGTCAATTTGATTATTGGCCATGGCAATGAATACAGCGAAATTTTCAATTTAATCAGTGAAGA
TTATCCGAAAACACAATTTATCACGGTAAATGGAAACAAGCCTCAGGCGGATAATGTTGCGAATGTGACGTTTAAAGGTG
AAGCGATGGGCTTTTTCGGAGGCATGACAGCAGCACATATGTCAAAATCAAAAAAGATTGGTATTCTTGCTACATATGAT
TGGCAAAGCGAAGTAGACGGCTTTATCAAAGGTGCAAAATATCAAGATGAACATGTACAAGTGCTTGCTGAGTTTGTCGA
AAACTGGGATGATGCGGACAAAGCCGTGGAGCTCTATCAAAAATTGAAAAAACAAGGCGTAGATGTTGTATATCCAGCAG
GTGATGGTTATAATATCCCTGTCATTGAACAAATCAAAGCCGATAATTTATCTGCGATCGGATATGTCACCGATCAATCC
AACCTCGGCAGCCATACCGTTTTAACAAGCACAGTCCAGCATGTGGATAAAGCGTACGGTATTATTGCGAAGAAATTTAA
TGAAGGCAAGCTAAATGCACAAGGTGAGTACTCCTTTGACTTTAAAGAAGGAGTGATCGAAATGGGGAAATTTAGTTCTA
CCATTGACCGTGCTTTTTTGAAAGACATTGAAAGTGATATTGCGACTTACAAAAAAACTGGCAAACTGCCAAATGAAAAG
TGA

Domains

Predicted by InterproScan.

• ABC transporter substrate-binding protein PnrA-like (Bmp) (28-318)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
med	Bacillus subtilis subsp. subtilis str. 168	63.898	97.813	0.625