Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   UP12_RS05630 Genome accession   NZ_CP011007
Coordinates   1168680..1168877 (+) Length   65 a.a.
NCBI ID   WP_058014495.1    Uniprot ID   -
Organism   Bacillus pumilus strain SH-B9     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1163680..1173877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP12_RS05600 (UP12_05600) - 1164089..1164268 (+) 180 WP_003211282.1 YjzC family protein -
  UP12_RS05605 (UP12_05605) - 1164438..1165703 (+) 1266 WP_058014315.1 MFS transporter -
  UP12_RS05610 (UP12_05610) - 1165819..1166013 (-) 195 WP_003211779.1 YjzD family protein -
  UP12_RS05615 (UP12_05615) - 1166225..1166965 (+) 741 WP_058014314.1 hypothetical protein -
  UP12_RS05620 (UP12_05620) - 1167041..1167616 (+) 576 WP_058014313.1 hypothetical protein -
  UP12_RS05625 (UP12_05625) med 1167707..1168669 (+) 963 WP_058014312.1 BMP family ABC transporter substrate-binding protein Regulator
  UP12_RS05630 (UP12_05630) comZ 1168680..1168877 (+) 198 WP_058014495.1 ComZ family protein Regulator
  UP12_RS05635 (UP12_05635) - 1168888..1169121 (-) 234 WP_058014311.1 hypothetical protein -
  UP12_RS05640 (UP12_05640) - 1169291..1170229 (+) 939 WP_012009552.1 beta-ketoacyl-ACP synthase III -
  UP12_RS05645 (UP12_05645) fabF 1170251..1171492 (+) 1242 WP_058014310.1 beta-ketoacyl-ACP synthase II -
  UP12_RS05650 (UP12_05650) - 1171570..1172373 (+) 804 WP_058014309.1 DUF2268 domain-containing protein -
  UP12_RS05655 (UP12_05655) - 1172534..1173514 (+) 981 WP_058014308.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 65 a.a.        Molecular weight: 7310.34 Da        Isoelectric Point: 4.1018

>NTDB_id=141315 UP12_RS05630 WP_058014495.1 1168680..1168877(+) (comZ) [Bacillus pumilus strain SH-B9]
MQQEKSMEFLQIAMKYFPQAKEELDKAGIQLEPEALQPLLSLFTSVMQEAYELGKADAESGKATE

Nucleotide


Download         Length: 198 bp        

>NTDB_id=141315 UP12_RS05630 WP_058014495.1 1168680..1168877(+) (comZ) [Bacillus pumilus strain SH-B9]
ATGCAGCAAGAAAAATCGATGGAGTTTTTACAAATTGCCATGAAGTATTTTCCTCAGGCAAAAGAAGAATTAGATAAAGC
AGGTATTCAGCTTGAGCCCGAAGCTCTTCAGCCGCTTTTATCATTGTTTACATCTGTCATGCAAGAGGCATATGAGCTTG
GAAAAGCAGATGCAGAATCAGGAAAAGCCACAGAATAG

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

70

92.308

0.646

Multiple sequence alignment