Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   N805_RS15065 Genome accession   NZ_CP010979
Coordinates   3409425..3411638 (-) Length   737 a.a.
NCBI ID   WP_019473810.1    Uniprot ID   -
Organism   Pseudomonas putida S13.1.2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3404425..3416638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N805_RS15030 (N805_15040) murB 3404439..3405458 (-) 1020 WP_028614018.1 UDP-N-acetylmuramate dehydrogenase -
  N805_RS15035 (N805_15045) - 3405455..3405919 (-) 465 WP_028614017.1 low molecular weight protein-tyrosine-phosphatase -
  N805_RS15040 (N805_15050) kdsB 3405919..3406683 (-) 765 WP_028614016.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N805_RS15045 (N805_15055) - 3406680..3406865 (-) 186 WP_003247142.1 Trm112 family protein -
  N805_RS15050 (N805_15060) lpxK 3406910..3407911 (-) 1002 WP_028614015.1 tetraacyldisaccharide 4'-kinase -
  N805_RS15055 (N805_15065) - 3407911..3408345 (-) 435 WP_028614014.1 ExbD/TolR family protein -
  N805_RS15060 (N805_15070) exbB 3408342..3408977 (-) 636 WP_028614013.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N805_RS15065 (N805_15075) comA 3409425..3411638 (-) 2214 WP_019473810.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N805_RS29915 - 3411781..3412419 (+) 639 WP_019473811.1 DUF2062 domain-containing protein -
  N805_RS15070 (N805_15080) - 3412303..3413082 (-) 780 WP_016500910.1 ABC transporter permease -
  N805_RS15075 (N805_15085) - 3413079..3414011 (-) 933 WP_019473812.1 ABC transporter ATP-binding protein -
  N805_RS15080 (N805_15090) - 3414144..3414767 (-) 624 WP_019473813.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79343.30 Da        Isoelectric Point: 10.8836

>NTDB_id=141070 N805_RS15065 WP_019473810.1 3409425..3411638(-) (comA) [Pseudomonas putida S13.1.2]
MRTGMFALALGLLCLGLLPALPSVGWLLALAAFAVVSLCTRAWPLGCFLLGLCWACWSAQQAVDDRLAVGLDGRTLWLEG
RVVGLPPRTAQGVRFELEAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVTGGWRDVLRQRLLAVEANGRQAALVALVLGDGTGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGGLAGAGVPVQRACLMLAVVLLWRLRFRHLGAMLPLLLAAVAVLLVEPL
AALLPGFWLSFTAVATLIFCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDGLFRLLALVAQQRPAWVAPALPLWAWLLVLLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPFGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPARGESDLGERVVLPTLRKLGVGSLDTMVISHAHADHAGGAA
AIQRGLPVRRLIGGEALEEVPLQPCTSGEQWDWDGVRFSLWRWAAGQSSNDRSCVLLVEAQGERLLLAGDMEAAAERAWL
AAHETPRIDWLQAPHHGSRSSSTEAFIRATAPRGVLISRGRNNSFGHPHVQVVERYGRHGVVMHDTAVEGALRLVLGRQG
EVEGMRGQRRFWRVRAE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=141070 N805_RS15065 WP_019473810.1 3409425..3411638(-) (comA) [Pseudomonas putida S13.1.2]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCCTTCTCCCCGCATTGCCATCGGTCGGCTGGCT
GCTAGCGCTGGCGGCCTTTGCTGTCGTCAGCCTGTGTACCCGCGCCTGGCCGTTGGGCTGCTTTTTGCTGGGCCTGTGTT
GGGCATGTTGGTCTGCTCAGCAGGCCGTGGATGATCGCCTGGCCGTCGGCCTGGATGGCCGCACCTTATGGCTGGAGGGG
CGGGTAGTCGGCTTGCCGCCCCGAACGGCGCAGGGTGTTCGCTTCGAGCTGGAGGCGGCGCGCTCGCGGCGGGCCGAACT
GCCGCAACGGCTGCAATTGAGCTGGTTTGACGGGCCGCCGCTACGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCACATGGGCCCGACCGGGAAGCGCAACTGCTGGCGCGGCGGGTGGGCGCCACCGGT
ACGGTAAAAGCCGGGCAACTGCTGGCGCCGGTAACCGGTGGTTGGCGCGATGTGCTGCGCCAGCGTTTGCTGGCGGTCGA
AGCCAATGGCCGGCAGGCCGCGTTGGTGGCACTGGTGCTTGGCGACGGCACAGGGCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATCTCTGGCCAGCACATCGGCCTGGTGGCCGGTTTGCTGTATGGCCTG
GTCGCCGGACTGGCGCGTTGGGGGCTGTGGCCCGCTCGGTTACCGTGGCTGCCCTGGGCGTGTGGCCTGGCCATGGCGGC
GGCGCTGGCCTACGGCGGGCTGGCCGGTGCCGGTGTGCCGGTGCAGCGCGCCTGCCTGATGCTGGCGGTAGTGCTGTTGT
GGCGCCTGCGCTTTCGCCACCTCGGTGCAATGCTGCCGCTGTTGCTGGCGGCGGTCGCGGTGCTGCTGGTCGAACCGCTC
GCGGCGCTGCTGCCTGGGTTCTGGCTGTCATTTACGGCCGTGGCCACGCTCATTTTTTGCTTCAGTGCCCGGCTAGGGGG
CTGGCGGCCCTGGCAAGCCTGGACACGCGCCCAATGGGTGATCGCCATCGGCTTGTTGCCGGTGTTGTTGGCCACGGGTT
TGCCGGTGAGCCTGAGCGCGCCGCTGGCCAATCTTGTCGCGGTGCCTTGGGTGAGCCTGGCGGTGCTGCCTTTGGCACTG
CTGGGTACGTTGCTGCTGCCACTGGGCGGGGTAGGGGAGGCGCTGCTATGGCTGGCGGGTGGCCTGTTGGATGGGCTGTT
CCGGCTGCTGGCGCTGGTGGCGCAGCAGCGCCCGGCGTGGGTGGCGCCGGCTCTGCCATTGTGGGCCTGGCTGCTGGTAT
TGCTGGGTGCGCTGCTGGTGCTGCTGCCCCGCGGCGTGCCTTTGCGCGGGTTGGGTGGGGTCATGTTGCTGGCGTTGTGG
GTGCCCAGGGAGCCAGTGCCGTTCGGCCAGGTCGAGGTGTGGCAGCTGGATGTCGGCCAGGGGCTGGCGGTGCTGTTGCG
TACTCGGCACCACAACCTGTTGTACGACGCCGGGCCGGCCAGGGGCGAAAGCGACCTGGGGGAGCGGGTGGTGCTGCCGA
CTTTGCGCAAGCTGGGGGTGGGCAGCCTGGACACGATGGTGATCAGCCATGCGCATGCCGACCATGCGGGCGGTGCTGCG
GCCATACAGCGTGGTCTGCCGGTCAGGCGGCTGATCGGCGGGGAGGCGCTGGAAGAAGTGCCATTGCAGCCTTGTACCAG
TGGCGAGCAATGGGACTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGCGGCCGGGCAGAGCAGCAATGACCGTTCCT
GTGTGCTGTTGGTAGAGGCCCAGGGCGAGCGCTTGCTGCTGGCGGGGGATATGGAAGCTGCTGCCGAACGGGCCTGGCTG
GCGGCCCATGAAACGCCGCGTATCGACTGGTTGCAGGCACCGCACCATGGCAGCCGCAGTTCGTCCACCGAGGCGTTCAT
CCGGGCTACTGCGCCGCGTGGGGTATTGATTTCGCGAGGGCGCAACAACAGCTTCGGGCATCCGCATGTGCAAGTGGTGG
AGCGGTATGGGCGGCATGGGGTGGTGATGCATGATACGGCGGTGGAGGGGGCATTGCGGTTGGTGTTGGGGCGGCAGGGA
GAGGTTGAGGGTATGAGGGGGCAGCGGCGGTTTTGGCGGGTTCGAGCAGAGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.639

97.829

0.583
  comA Ralstonia pseudosolanacearum GMI1000

36.719

100

0.383

Multiple sequence alignment