Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N805_RS15060 Genome accession   NZ_CP010979
Coordinates   3408342..3408977 (-) Length   211 a.a.
NCBI ID   WP_028614013.1    Uniprot ID   A0AAU8S5I2
Organism   Pseudomonas putida S13.1.2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3403342..3413977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N805_RS15030 (N805_15040) murB 3404439..3405458 (-) 1020 WP_028614018.1 UDP-N-acetylmuramate dehydrogenase -
  N805_RS15035 (N805_15045) - 3405455..3405919 (-) 465 WP_028614017.1 low molecular weight protein-tyrosine-phosphatase -
  N805_RS15040 (N805_15050) kdsB 3405919..3406683 (-) 765 WP_028614016.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N805_RS15045 (N805_15055) - 3406680..3406865 (-) 186 WP_003247142.1 Trm112 family protein -
  N805_RS15050 (N805_15060) lpxK 3406910..3407911 (-) 1002 WP_028614015.1 tetraacyldisaccharide 4'-kinase -
  N805_RS15055 (N805_15065) - 3407911..3408345 (-) 435 WP_028614014.1 ExbD/TolR family protein -
  N805_RS15060 (N805_15070) exbB 3408342..3408977 (-) 636 WP_028614013.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N805_RS15065 (N805_15075) comA 3409425..3411638 (-) 2214 WP_019473810.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N805_RS29915 - 3411781..3412419 (+) 639 WP_019473811.1 DUF2062 domain-containing protein -
  N805_RS15070 (N805_15080) - 3412303..3413082 (-) 780 WP_016500910.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22861.14 Da        Isoelectric Point: 7.3616

>NTDB_id=141069 N805_RS15060 WP_028614013.1 3408342..3408977(-) (exbB) [Pseudomonas putida S13.1.2]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANASVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=141069 N805_RS15060 WP_028614013.1 3408342..3408977(-) (exbB) [Pseudomonas putida S13.1.2]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCTTGCGCGCCGATTCGCCATTGGGCGAAATCCTTGCGGCAGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATTCACGAACTGGAGCGCTACAT
CAGCACGCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GTGCGTTCATGGGCTCGCAAATGACTGCCAATGCGTCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCC
GCCGGCCTGATGGTCGGTATCCCGGCAGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAAGAGGCGATCAAACTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment