Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   UB51_RS21975 Genome accession   NZ_CP010976
Coordinates   4847743..4848222 (-) Length   159 a.a.
NCBI ID   WP_044879139.1    Uniprot ID   A0A0D3VG85
Organism   Paenibacillus sp. IHBB 10380     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4842743..4853222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UB51_RS21955 (UB51_21950) opp4C 4843005..4843901 (-) 897 WP_199925049.1 oligopeptide ABC transporter permease -
  UB51_RS21960 (UB51_21955) - 4843941..4844903 (-) 963 WP_044879136.1 ABC transporter permease -
  UB51_RS21965 (UB51_21960) - 4845036..4846772 (-) 1737 WP_199925050.1 ABC transporter substrate-binding protein -
  UB51_RS21970 (UB51_21965) rpsR 4847449..4847721 (-) 273 WP_044879138.1 30S ribosomal protein S18 -
  UB51_RS21975 (UB51_21970) ssbA 4847743..4848222 (-) 480 WP_044879139.1 single-stranded DNA-binding protein Machinery gene
  UB51_RS21980 (UB51_21975) rpsF 4848272..4848556 (-) 285 WP_044879140.1 30S ribosomal protein S6 -
  UB51_RS21985 (UB51_21980) - 4848771..4848965 (+) 195 WP_044879141.1 YjzC family protein -
  UB51_RS21990 (UB51_21985) - 4849338..4849859 (-) 522 WP_044879142.1 hypothetical protein -
  UB51_RS22000 (UB51_21995) - 4850324..4850548 (-) 225 WP_044879143.1 DUF951 domain-containing protein -
  UB51_RS22005 (UB51_22000) - 4850594..4851487 (-) 894 WP_044879144.1 mechanosensitive ion channel family protein -
  UB51_RS22010 (UB51_22005) - 4851500..4851754 (-) 255 WP_044879145.1 DUF3343 domain-containing protein -
  UB51_RS22015 (UB51_22010) yyaC 4851897..4852502 (+) 606 WP_044879146.1 spore protease YyaC -
  UB51_RS22020 (UB51_22015) - 4852477..4852977 (-) 501 WP_044879147.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17637.47 Da        Isoelectric Point: 4.8700

>NTDB_id=141038 UB51_RS21975 WP_044879139.1 4847743..4848222(-) (ssbA) [Paenibacillus sp. IHBB 10380]
MLNRVILIGRLTKDPELRYTPAGVAVTQFTLAVDRPFTAQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESPNREGGSGGNSSATREEPSYGGEGRGNSSRKNNNQDPFSDDGKPIDISDDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=141038 UB51_RS21975 WP_044879139.1 4847743..4848222(-) (ssbA) [Paenibacillus sp. IHBB 10380]
TTGTTGAATCGTGTCATTCTGATCGGCCGGTTAACTAAAGATCCCGAATTGCGCTATACACCTGCAGGGGTGGCTGTAAC
GCAATTTACGCTCGCTGTGGATCGTCCGTTTACGGCACAAGGCGGCGAGCGCGAAGCGGATTTTATTCCGGTTGTAACTT
GGAGACAGCTTGCAGAGACTTGCGCCAATTATTTGCGTAAAGGCCGATTAACGGCTGTTGAAGGACGCATTCAAGTACGA
AATTACGAGAATAACGAAGGTAAACGTGTATACGTCACCGAAGTTATTGCCGATAATGTTCGTTTCTTGGAGTCGCCAAA
CCGCGAGGGCGGTAGCGGCGGGAATAGTAGTGCTACACGTGAAGAGCCTTCCTATGGGGGCGAAGGACGTGGAAATTCCT
CACGCAAAAATAACAATCAAGATCCCTTTTCCGATGACGGAAAACCGATAGATATTTCGGATGATGATTTGCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D3VG85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.629
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.25

70.44

0.396

Multiple sequence alignment