Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   TQ33_RS10785 Genome accession   NZ_CP010975
Coordinates   2345999..2346400 (-) Length   133 a.a.
NCBI ID   WP_046562044.1    Uniprot ID   -
Organism   Kangiella geojedonensis strain YCS-5     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2340999..2351400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQ33_RS10765 (TQ33_2124) - 2341691..2342533 (-) 843 WP_052735290.1 protein-glutamate O-methyltransferase CheR -
  TQ33_RS10770 (TQ33_2125) - 2342578..2344998 (-) 2421 WP_046562041.1 methyl-accepting chemotaxis protein -
  TQ33_RS10775 (TQ33_2126) - 2345041..2345589 (-) 549 WP_046562042.1 chemotaxis protein CheW -
  TQ33_RS10780 (TQ33_2127) - 2345596..2345961 (-) 366 WP_046562043.1 response regulator transcription factor -
  TQ33_RS10785 (TQ33_2128) pilG 2345999..2346400 (-) 402 WP_046562044.1 twitching motility response regulator PilG Regulator
  TQ33_RS10790 (TQ33_2129) gshB 2346641..2347597 (+) 957 WP_046562045.1 glutathione synthase -
  TQ33_RS10795 (TQ33_2130) - 2347625..2348527 (+) 903 WP_046562046.1 energy transducer TonB -
  TQ33_RS10800 (TQ33_2131) - 2348578..2349141 (+) 564 WP_052735291.1 YqgE/AlgH family protein -
  TQ33_RS10805 (TQ33_2132) ruvX 2349134..2349577 (+) 444 WP_046562047.1 Holliday junction resolvase RuvX -
  TQ33_RS10810 (TQ33_2133) pilU 2349667..2350806 (-) 1140 WP_046562048.1 PilT/PilU family type 4a pilus ATPase Machinery gene

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14556.82 Da        Isoelectric Point: 7.7758

>NTDB_id=141008 TQ33_RS10785 WP_046562044.1 2345999..2346400(-) (pilG) [Kangiella geojedonensis strain YCS-5]
MSDLFNGLKVMVVDDSKTIRRTAETLLKKQGCDVVTGVDGYDALSKIADYKPDIIFIDIMMPRLDGYQTCALVKSNQAFK
KTPIIMLSSKDGVFDKAKGRVVGSDNYLTKPFSRDELLNAISTQLDGNAATAV

Nucleotide


Download         Length: 402 bp        

>NTDB_id=141008 TQ33_RS10785 WP_046562044.1 2345999..2346400(-) (pilG) [Kangiella geojedonensis strain YCS-5]
ATGAGTGATTTATTTAATGGATTAAAAGTGATGGTGGTGGACGATAGTAAAACCATCCGACGCACCGCGGAAACACTTTT
AAAGAAGCAAGGTTGTGATGTTGTAACGGGAGTCGACGGCTACGATGCGCTCTCAAAAATTGCAGATTACAAGCCTGATA
TCATTTTTATTGATATAATGATGCCAAGGCTCGATGGGTATCAAACCTGCGCCTTGGTCAAGAGTAATCAAGCTTTCAAG
AAAACCCCGATAATAATGCTTTCTAGTAAAGACGGGGTGTTCGACAAGGCGAAAGGCCGAGTTGTAGGTTCGGATAATTA
TTTAACTAAACCTTTCAGCCGTGACGAATTATTAAATGCTATTTCCACACAATTAGACGGTAATGCAGCAACTGCCGTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

72

93.985

0.677
  vicR Streptococcus mutans UA159

44.444

87.97

0.391

Multiple sequence alignment