Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   SCVJan_RS03370 Genome accession   NZ_CP013478
Coordinates   701768..702412 (-) Length   214 a.a.
NCBI ID   WP_034016233.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SCVJan     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 696768..707412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCVJan_RS29500 - 697135..697492 (+) 358 Protein_644 phage tail protein -
  SCVJan_RS03345 (SCVJan_0653) - 698526..698810 (+) 285 WP_003117977.1 hypothetical protein -
  SCVJan_RS03355 (SCVJan_0654) - 699217..699822 (+) 606 WP_031671271.1 aminodeoxychorismate/anthranilate synthase component II -
  SCVJan_RS03360 (SCVJan_0655) trpD 699824..700873 (+) 1050 WP_003085203.1 anthranilate phosphoribosyltransferase -
  SCVJan_RS03365 (SCVJan_0656) trpC 700870..701706 (+) 837 WP_003459446.1 indole-3-glycerol phosphate synthase TrpC -
  SCVJan_RS03370 (SCVJan_0657) crp 701768..702412 (-) 645 WP_034016233.1 cAMP-activated global transcriptional regulator CRP Regulator
  SCVJan_RS03375 (SCVJan_0658) - 702684..703106 (+) 423 WP_003085219.1 OsmC family protein -
  SCVJan_RS03380 (SCVJan_0659) speD 703426..704220 (+) 795 WP_003085223.1 adenosylmethionine decarboxylase -
  SCVJan_RS03385 (SCVJan_0660) coq7 704275..704922 (-) 648 WP_003085224.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  SCVJan_RS03390 (SCVJan_0661) - 705022..705360 (-) 339 WP_003085225.1 histidine triad nucleotide-binding protein -
  SCVJan_RS03395 (SCVJan_0662) - 705439..706920 (+) 1482 WP_003117981.1 AAA family ATPase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24221.02 Da        Isoelectric Point: 8.0525

>NTDB_id=140880 SCVJan_RS03370 WP_034016233.1 701768..702412(-) (crp) [Pseudomonas aeruginosa strain SCVJan]
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK
EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPD
AMPHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=140880 SCVJan_RS03370 WP_034016233.1 701768..702412(-) (crp) [Pseudomonas aeruginosa strain SCVJan]
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGCTACACCGC
AAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCGGTCACCATCCTCATCG
AGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTCGGCGAGCTGGGATTGTTCGAAAAG
GAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGTGCCAAGGTGGAATGCGAAGTCGCCGAGATCAGCTATGCGAAGTT
CCGCGAACTGTCGCAGCAGGACTCGGAGATCCTCTACACCCTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCC
GCAAGGTGGGCGACCTGGCCTTCCTCGACGTCACCGGACGCGTCGCCCGCACCTTGCTGGACCTGTGCCAGCAACCGGAC
GCCATGCCCCACCCGGACGGCATGCAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAAT
GGTCGGACGCGTGCTGAAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGAAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

66.832

94.393

0.631
  crp Haemophilus influenzae Rd KW20

59.901

94.393

0.565
  crp Acinetobacter baumannii D1279779

54.545

92.523

0.505