Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   UC78_RS07015 Genome accession   NZ_CP010906
Coordinates   1383126..1383437 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 35925     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1378126..1388437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC78_RS06995 (UC78_1403) ctsE 1378995..1380554 (-) 1560 WP_044260336.1 GspE/PulE family protein Machinery gene
  UC78_RS07000 (UC78_1404) ctsX 1380544..1381131 (-) 588 WP_002851370.1 membrane protein Machinery gene
  UC78_RS07005 (UC78_1405) ctsP 1381135..1381743 (-) 609 WP_002899084.1 ATP-binding protein Machinery gene
  UC78_RS07010 (UC78_1406) ctsD 1381736..1383148 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  UC78_RS07015 (UC78_1407) ctsR 1383126..1383437 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  UC78_RS07020 (UC78_1408) nifJ 1383461..1387021 (-) 3561 WP_002921284.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  UC78_RS07025 (UC78_1409) - 1387114..1387755 (-) 642 WP_044306259.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=140773 UC78_RS07015 WP_002862131.1 1383126..1383437(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain 35925]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=140773 UC78_RS07015 WP_002862131.1 1383126..1383437(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain 35925]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment