Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PF1751_RS16050 Genome accession   NZ_CP010896
Coordinates   3594504..3596729 (-) Length   741 a.a.
NCBI ID   WP_226994522.1    Uniprot ID   -
Organism   Pseudomonas simiae strain PCL1751     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3589504..3601729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF1751_RS16015 (PF1751_v1c31830) murB 3589909..3590928 (-) 1020 WP_010209654.1 UDP-N-acetylmuramate dehydrogenase -
  PF1751_RS16020 (PF1751_v1c31840) - 3590925..3591389 (-) 465 WP_044287349.1 low molecular weight protein-tyrosine-phosphatase -
  PF1751_RS16025 (PF1751_v1c31850) kdsB 3591389..3592153 (-) 765 WP_010209652.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PF1751_RS16030 (PF1751_v1c31860) - 3592150..3592335 (-) 186 WP_003174668.1 Trm112 family protein -
  PF1751_RS16035 (PF1751_v1c31870) lpxK 3592360..3593370 (-) 1011 WP_044287350.1 tetraacyldisaccharide 4'-kinase -
  PF1751_RS16040 (PF1751_v1c31880) - 3593370..3593798 (-) 429 WP_010209650.1 ExbD/TolR family protein -
  PF1751_RS16045 (PF1751_v1c31890) exbB 3593795..3594430 (-) 636 WP_010209649.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PF1751_RS16050 (PF1751_v1c31900) comA 3594504..3596729 (-) 2226 WP_226994522.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PF1751_RS16055 (PF1751_v1c31910) - 3596865..3597380 (+) 516 WP_021492748.1 DUF2062 domain-containing protein -
  PF1751_RS16060 (PF1751_v1c31920) - 3597377..3598747 (-) 1371 WP_010209646.1 sensor histidine kinase -
  PF1751_RS16065 (PF1751_v1c31930) - 3598734..3599462 (-) 729 WP_021492750.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80465.48 Da        Isoelectric Point: 10.9694

>NTDB_id=140694 PF1751_RS16050 WP_226994522.1 3594504..3596729(-) (comA) [Pseudomonas simiae strain PCL1751]
MRTGMFAFALGLLALRFLPALPPTGWLIALLVLALMLLPFRTYPLAFFLLGLSWACISAQWALDDRLRPALEGQTRWVEG
QVSGLPQQTGDGVRFVLTDSRSRNARLPKRIRVSWRGGPPVRSGERWRLAITLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLAPATAAWRDSVRQRLLAVDAQGREAGLIALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGFWPRTWPWLPWACGLAFTTALGYGLLAGFGVPVQRACVMVGLVLLWRWRLRHLGLWWPLLLALNGVLVLEPL
ASVQPGFWLSFAAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGSALLVLPFVGEGLLWLAGGALDALFNGLAWLAGQMPAWIPAEVPPGYWLVSLLGATLLLLPKGVPFRVLGWPMLLLAV
FPPRAPVPDGQVEVTQLDVGQGQSLILRTRHHTLLYDAGPRSGAFDLGARVVLPSLRKLGIGELDMLLLSHADADHAGGA
AAIAKGMPIKRVVGGETEGLPISLGTQPCVSGERWTWDGVTFELWQWPDAISGNAKSCVLQVQAKGERLLLTGDIDRAAE
HAMLASPLAVPTDWLQAPHHGSRSSSSWPFVERLAPRSVLISRGRSNAFGHPHPQVMARYQRLGSQVYDSAEQGAVRLRL
GAFAAPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=140694 PF1751_RS16050 WP_226994522.1 3594504..3596729(-) (comA) [Pseudomonas simiae strain PCL1751]
ATGAGGACAGGGATGTTCGCGTTTGCGCTGGGGTTGCTGGCCTTGCGCTTTTTACCGGCATTGCCGCCGACCGGTTGGCT
GATCGCCCTGCTGGTGTTGGCCTTGATGCTGTTGCCGTTTCGCACTTATCCCTTGGCGTTTTTTCTGTTGGGGCTGAGTT
GGGCCTGTATCAGCGCGCAGTGGGCGCTGGATGACCGTCTCAGGCCCGCGCTGGAGGGGCAAACACGCTGGGTGGAAGGG
CAGGTCAGCGGGCTGCCGCAACAGACGGGCGATGGCGTGCGCTTCGTACTCACCGACAGTCGGTCGCGTAACGCTCGGTT
GCCCAAGCGCATCCGGGTGTCCTGGCGCGGTGGGCCGCCCGTGCGCAGCGGTGAACGCTGGCGCCTGGCAATCACCCTCA
AGCGGCCGGCCGGGTTGCTGAACTTTCATGGGTTTGATCAGGAGGCCTGGCTGCTCGCCCAGCGCATCGGCGCCACGGGT
ACGGTAAAGGACGGAGAGCGCCTGGCCCCGGCTACCGCCGCCTGGCGTGACAGTGTGCGTCAGCGCCTGCTGGCGGTAGA
TGCCCAAGGCAGGGAGGCAGGCCTGATTGCCTTGGTGTTGGGCGATGGCTCTGGATTGGCGGCGGCTGATTGGCAGGTAC
TGCAGGACACCGGCACTGTGCACCTGCTGGTCATCTCCGGCCAGCACATCGGCTTGCTCGCTGGCTTGATCTACGGATTG
ATCGCCGGCCTGGCGCGCTATGGGTTCTGGCCTCGAACCTGGCCGTGGCTGCCGTGGGCCTGTGGGCTGGCGTTCACCAC
GGCATTGGGTTATGGCTTGCTGGCCGGGTTTGGCGTGCCGGTACAGCGCGCCTGTGTGATGGTTGGGTTGGTATTGTTGT
GGCGATGGCGCTTGCGCCATCTCGGGCTGTGGTGGCCGTTGTTGCTGGCGCTCAATGGGGTGCTGGTCCTGGAACCATTG
GCCAGTGTGCAGCCGGGTTTCTGGCTGTCATTTGCGGCGGTGGCGGTGCTGATCCTGGCGTTTGGCGGACGGCTGGGGCC
CTGGAGCCTATGGCAGGCCTGGACCCGGCCGCAGTGGTTGATTGCCATCGGGTTGTTTCCGGTCTTGCTGGTGTTGGGGT
TGCCCATCAGCCTGAGCGCACCATTCGCTAACCTGGTGGCGGTGCCATGGATCAGCCTGGTGGTATTGCCGTTGGCCCTG
TTGGGCAGCGCATTGCTGGTGCTGCCGTTTGTGGGGGAAGGATTGCTCTGGCTGGCGGGAGGGGCGCTGGATGCCTTGTT
TAACGGCTTGGCGTGGCTCGCCGGGCAGATGCCGGCCTGGATTCCGGCCGAAGTACCGCCGGGGTATTGGCTGGTGAGTC
TGCTGGGCGCCACGTTGCTCCTGTTGCCCAAGGGCGTGCCGTTTCGTGTGCTGGGCTGGCCGATGCTGTTGCTGGCGGTG
TTTCCACCGCGAGCGCCGGTGCCTGACGGGCAGGTGGAGGTGACGCAGCTTGACGTCGGCCAGGGGCAATCGCTGATTTT
GCGTACCCGCCATCACACCTTGCTGTACGACGCCGGCCCGCGCTCCGGAGCCTTTGACCTGGGGGCCCGCGTGGTACTGC
CATCTTTGCGAAAACTCGGGATAGGGGAGCTGGACATGCTGCTGCTCAGCCACGCCGACGCCGATCATGCCGGTGGCGCA
GCAGCCATTGCCAAAGGCATGCCGATCAAGCGCGTGGTGGGCGGAGAGACCGAAGGCCTGCCAATATCGCTCGGCACCCA
GCCTTGCGTCAGTGGCGAGCGCTGGACCTGGGACGGCGTGACCTTCGAACTCTGGCAATGGCCTGACGCTATCAGCGGCA
ACGCGAAGTCCTGCGTTTTGCAGGTGCAGGCCAAGGGTGAGCGCCTGTTGCTGACCGGTGATATTGACCGCGCAGCCGAA
CACGCCATGCTCGCGTCCCCCCTTGCGGTGCCCACCGATTGGCTGCAGGCGCCGCACCATGGCAGTCGCAGTTCTTCGTC
CTGGCCCTTTGTGGAGCGACTTGCGCCGCGATCCGTGCTGATCTCGCGTGGGCGCAGCAACGCGTTCGGCCATCCCCATC
CGCAGGTGATGGCGCGTTACCAGCGGTTGGGCAGCCAGGTGTATGACTCTGCCGAGCAGGGCGCCGTGCGTCTGCGATTG
GGGGCTTTCGCAGCGCCGGTTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAGCGGTTACCTTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(19-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.417

97.166

0.587
  comA Ralstonia pseudosolanacearum GMI1000

35.1

100

0.402

Multiple sequence alignment