Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   TO73_RS11495 Genome accession   NZ_CP010822
Coordinates   2152814..2154844 (+) Length   676 a.a.
NCBI ID   WP_040684643.1    Uniprot ID   -
Organism   Thermus aquaticus Y51MC23     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2147814..2159844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TO73_RS11455 (TO73_2380) - 2148000..2148461 (+) 462 WP_003049125.1 hypothetical protein -
  TO73_RS11460 (TO73_2381) pfkA 2148438..2149406 (-) 969 WP_003049123.1 6-phosphofructokinase -
  TO73_RS11465 (TO73_2382) rsmI 2149403..2150191 (-) 789 WP_003049122.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  TO73_RS11470 (TO73_2383) - 2150196..2150594 (-) 399 WP_003049120.1 hypothetical protein -
  TO73_RS11475 (TO73_2384) - 2150731..2151258 (-) 528 WP_003049118.1 inorganic diphosphatase -
  TO73_RS11480 (TO73_2385) - 2151269..2151898 (-) 630 WP_003049117.1 glycerophosphodiester phosphodiesterase -
  TO73_RS11485 (TO73_2386) - 2151922..2152536 (+) 615 WP_003049115.1 YcxB family protein -
  TO73_RS11490 (TO73_2387) comEA 2152509..2152817 (+) 309 WP_003049113.1 ComEA family DNA-binding protein Machinery gene
  TO73_RS11495 (TO73_2388) comA/comEC 2152814..2154844 (+) 2031 WP_040684643.1 ComEC/Rec2 family competence protein Machinery gene
  TO73_RS11500 (TO73_2389) - 2154832..2155638 (-) 807 WP_003049110.1 ParB/RepB/Spo0J family partition protein -
  TO73_RS11505 (TO73_2390) soj 2155622..2156371 (-) 750 WP_003049107.1 chromosome-partitioning ATPase Soj -
  TO73_RS11510 (TO73_2391) rsmG 2156365..2157093 (-) 729 WP_003049106.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  TO73_RS11515 (TO73_2392) mnmG 2157119..2158909 (-) 1791 WP_003049104.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 71688.37 Da        Isoelectric Point: 10.2483

>NTDB_id=140112 TO73_RS11495 WP_040684643.1 2152814..2154844(+) (comA/comEC) [Thermus aquaticus Y51MC23]
MKGALSSSGVGLGLGGLLGALALLYPALLLLAPLGLRLGLPFFLGLVLVLLRGLLFPVPEPPYGLRVEGTLAVREGFTRW
EGHRLRVKHFPPLENGVYHLRGYLAPPEPRRNPGGFDERAWLLAQGVKGVFHVEQAKRLSALPDPRTSFRARLAEGLSPP
AKEVLEGLVLGDKRGLEDAYLLFQKAGLAHLLAVSGLHVGFLVGAILLLPLGRWRYLLALALLPLYLFLAGPSPSLVRAS
LMAGLSLLGLFLGLGAAGVVQALGLALFLQLLLRPEAILGLGLQLSYLAVLSLALVLPALRLPPGLKGYLLGGLAASLAV
QAFLAPLLLHRFHLLPLLSPLANLLAAPLVALLVPLGFLKLLLGGALAWAVEPLARGLLFLAGVASQGPLLRLGEISPQG
FALYYLGLLPPLLALHDLLPWRKALLLASLPALVGLTTGLPKPVDLWLLDVGQGDALLARMGGAEVLVDGGRPEQGEKVV
RALRALGVEALEVLVATHPDADHFGGLLRVVEEVPVGLALLSPAFPQDHPLVQALEAKGVPTLRPGAGTALRVGKGRIQV
LWPRHLSHDDNRDGLALLLDLGRAKALLLADLPAEVEEKLAPGPVEILKVSHHGSRTGTSEALLAQTRPRIALIGVGKNP
FGHPHPEVLERLQAHGVKVYRTDRMGAVRVDLGYAW

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=140112 TO73_RS11495 WP_040684643.1 2152814..2154844(+) (comA/comEC) [Thermus aquaticus Y51MC23]
GTGAAAGGAGCCCTTTCTTCCTCCGGCGTGGGTCTGGGCCTGGGGGGCCTCCTGGGGGCTTTGGCCCTCCTCTACCCCGC
CCTTCTGCTCCTGGCCCCCCTGGGCCTCCGCCTTGGCCTCCCTTTTTTCCTGGGGCTCGTTCTCGTGCTCTTGCGGGGCC
TCCTTTTTCCCGTCCCGGAGCCCCCTTACGGGCTTAGGGTGGAGGGAACCTTGGCCGTCCGGGAGGGGTTCACCCGGTGG
GAGGGCCACCGCCTCAGGGTGAAGCACTTCCCTCCCCTCGAGAACGGGGTCTACCACCTCCGGGGCTACCTGGCCCCGCC
CGAGCCCCGGCGCAACCCCGGCGGGTTTGACGAGCGGGCCTGGCTCCTGGCCCAGGGGGTCAAGGGCGTGTTTCACGTGG
AACAGGCCAAGCGCCTTTCGGCCCTGCCCGACCCCCGGACCTCCTTTAGGGCGCGGCTCGCAGAGGGCCTTTCCCCGCCC
GCCAAGGAGGTCCTCGAGGGCCTGGTCCTGGGGGACAAAAGGGGGCTGGAAGACGCCTACCTTCTCTTCCAAAAGGCCGG
GCTGGCCCACCTTCTCGCGGTCTCCGGCCTCCACGTGGGGTTTCTGGTAGGGGCTATTCTCCTCCTCCCCCTGGGGCGGT
GGCGCTACCTCCTGGCCCTGGCCCTCCTTCCCCTTTACCTTTTCCTGGCGGGGCCAAGCCCCTCCCTGGTCCGGGCGAGC
CTCATGGCGGGCCTCTCCCTCCTGGGCCTCTTCCTGGGCCTAGGGGCGGCGGGGGTGGTCCAGGCCCTGGGACTCGCCCT
CTTCCTCCAGCTCCTCCTCAGGCCCGAGGCCATCCTCGGCCTAGGCCTCCAGCTCTCCTATCTGGCCGTCCTGAGCCTGG
CCCTGGTCCTTCCCGCCCTCAGGCTTCCGCCGGGGCTCAAGGGCTACCTTCTCGGGGGCCTGGCCGCCAGCCTGGCGGTC
CAGGCCTTCCTGGCTCCCCTCCTTCTGCACCGCTTCCACCTCTTGCCTCTCCTGAGCCCCCTGGCCAACCTCCTGGCCGC
CCCTCTGGTGGCCCTCCTGGTCCCCCTGGGCTTCCTGAAGCTCCTTCTGGGCGGGGCGCTGGCCTGGGCTGTGGAGCCCC
TGGCCCGGGGGCTTCTCTTCCTGGCCGGGGTGGCCTCCCAGGGGCCCCTCCTCCGGCTGGGGGAGATCAGCCCCCAGGGC
TTCGCCCTCTACTACCTGGGGCTTCTTCCTCCGCTCCTCGCCCTCCATGACCTCCTCCCCTGGCGGAAAGCCCTCCTCCT
GGCAAGCCTCCCCGCCCTGGTGGGCCTGACCACGGGCCTCCCCAAGCCCGTGGACCTCTGGCTTTTGGACGTGGGCCAGG
GGGACGCCCTCCTGGCCCGCATGGGAGGGGCCGAGGTCCTGGTGGACGGGGGGAGGCCGGAGCAGGGGGAGAAGGTGGTG
CGGGCCCTGAGGGCCTTGGGGGTGGAGGCCCTCGAGGTCCTGGTGGCCACCCACCCCGACGCCGACCACTTCGGGGGGCT
TTTACGGGTGGTGGAGGAGGTTCCCGTGGGCCTCGCCCTCCTCTCCCCCGCCTTTCCCCAGGACCACCCCCTGGTCCAGG
CCCTGGAGGCCAAAGGGGTGCCCACCCTGAGGCCCGGGGCGGGCACGGCCCTCCGGGTGGGGAAAGGGCGGATCCAGGTC
CTCTGGCCCCGCCACCTCTCCCACGACGACAACCGGGACGGCCTGGCCCTCCTCCTGGACCTGGGGCGCGCCAAAGCCCT
CCTCCTGGCGGACCTTCCGGCGGAGGTGGAGGAAAAGCTGGCCCCTGGCCCCGTGGAGATCCTCAAGGTGAGCCACCACG
GGTCCAGGACCGGCACCTCCGAGGCGCTCCTGGCCCAGACCAGGCCCCGGATCGCCCTGATCGGCGTGGGGAAGAACCCC
TTCGGCCACCCCCACCCCGAGGTCCTAGAGCGCCTGCAGGCCCACGGGGTGAAGGTCTACCGCACGGACCGGATGGGCGC
GGTGCGGGTGGACCTGGGCTACGCCTGGTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(168-411)

Metallo-beta-lactamase superfamily (Lactamase_B)

(451-634)

Domain of unknown function (DUF4131) (DUF4131)

(98-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Thermus thermophilus HB27

74.405

99.408

0.74

Multiple sequence alignment