Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HR49_RS00180 Genome accession   NZ_CP010820
Coordinates   41283..41855 (+) Length   190 a.a.
NCBI ID   WP_036121887.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain RB-21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 36283..46855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR49_RS00150 (HR49_00150) - 36748..37620 (+) 873 WP_036121904.1 mechanosensitive ion channel family protein -
  HR49_RS00155 (HR49_00155) - 37622..37822 (+) 201 WP_036121899.1 DUF951 domain-containing protein -
  HR49_RS00160 (HR49_00160) ychF 37921..39021 (+) 1101 WP_036121895.1 redox-regulated ATPase YchF -
  HR49_RS00165 (HR49_00165) - 39104..40144 (+) 1041 WP_036121892.1 acyl-CoA dehydrogenase -
  HR49_RS00170 (HR49_00170) - 40186..40770 (-) 585 WP_036121890.1 DUF3267 domain-containing protein -
  HR49_RS00175 (HR49_00175) rpsF 40949..41236 (+) 288 WP_008177955.1 30S ribosomal protein S6 -
  HR49_RS00180 (HR49_00180) ssbA 41283..41855 (+) 573 WP_036121887.1 single-stranded DNA-binding protein Machinery gene
  HR49_RS00185 (HR49_00185) rpsR 41894..42130 (+) 237 WP_004233359.1 30S ribosomal protein S18 -
  HR49_RS00190 (HR49_00190) - 42355..43296 (+) 942 WP_036121884.1 YybS family protein -
  HR49_RS00195 (HR49_00195) - 43310..45280 (+) 1971 WP_036121881.1 DHH family phosphoesterase -
  HR49_RS00200 (HR49_00200) rplI 45280..45726 (+) 447 WP_036121876.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20676.66 Da        Isoelectric Point: 4.7719

>NTDB_id=140054 HR49_RS00180 WP_036121887.1 41283..41855(+) (ssbA) [Lysinibacillus fusiformis strain RB-21]
MINRVVLVGRLTKDPELRYTPNGIASTRFTVAVNRAFSNQQGEREADFINCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNGSGAPAPQYGSGQTYGNNQPSYGGGQPQQQFGGAMPGQGSYGGGDAYQQNQPP
MNQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=140054 HR49_RS00180 WP_036121887.1 41283..41855(+) (ssbA) [Lysinibacillus fusiformis strain RB-21]
ATGATAAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTACGTTATACACCAAATGGAATTGCGTCTAC
AAGATTTACAGTTGCTGTGAATCGTGCATTCTCAAATCAACAAGGTGAACGTGAAGCTGATTTCATTAACTGTGTTGCAT
GGCGAAAACAGGCTGAAAACCTAGCGAACTTCATGCGAAAAGGAAGTTTAATTGGGGTAGAAGGTCGTATCCAAACAGGC
AGTTATGAAGGACAAGACGGTAAGCGAGTATATACAACAGACGTTGTGGCGGATAGCGTACAGTTTTTAGAACCACGTAA
TGGTAGCGGAGCTCCTGCTCCTCAATACGGTAGTGGACAAACTTACGGTAATAACCAACCGTCATATGGCGGTGGTCAAC
CACAACAACAGTTTGGTGGCGCTATGCCAGGACAGGGTTCCTATGGCGGCGGCGATGCTTATCAGCAAAATCAACCACCT
ATGAATCAGCCAAACTATACACGTGTAGATGAGGATCCATTTGCTAATAGCAAAGGACCGATAGAAGTATCTGAGGATGA
TCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.789

100

0.558
  ssb Latilactobacillus sakei subsp. sakei 23K

48.421

100

0.484

Multiple sequence alignment