Detailed information
Bioinformatically predicted
Overview
| Name | crp | Type | Regulator |
| Locus tag | VAB027_RS06400 | Genome accession | NZ_CP010812 |
| Coordinates | 1375997..1376629 (-) | Length | 210 a.a. |
| NCBI ID | WP_000242749.1 | Uniprot ID | A0A6G8D3R0 |
| Organism | Vibrio cholerae strain 10432-62 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1352256..1392884 | 1375997..1376629 | within | 0 |
Gene organization within MGE regions
Location: 1352256..1392884
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VAB027_RS06280 (VAB027_1232) | - | 1352256..1353557 (-) | 1302 | WP_235290684.1 | McrC family protein | - |
| VAB027_RS06285 (VAB027_1233) | - | 1353564..1354703 (-) | 1140 | WP_046126404.1 | AAA family ATPase | - |
| VAB027_RS06290 (VAB027_1234) | - | 1354693..1355289 (-) | 597 | WP_046126405.1 | hypothetical protein | - |
| VAB027_RS06295 (VAB027_1235) | - | 1355282..1357513 (-) | 2232 | WP_046126406.1 | Eco57I restriction-modification methylase domain-containing protein | - |
| VAB027_RS06300 (VAB027_1236) | - | 1357510..1358589 (-) | 1080 | WP_046126407.1 | DNA adenine methylase | - |
| VAB027_RS06305 | - | 1358776..1359354 (+) | 579 | Protein_1223 | IS3 family transposase | - |
| VAB027_RS19470 (VAB027_1238) | - | 1359392..1360615 (-) | 1224 | WP_080341744.1 | site-specific integrase | - |
| VAB027_RS06315 (VAB027_1239) | - | 1360591..1360779 (-) | 189 | WP_000083581.1 | hypothetical protein | - |
| VAB027_RS06320 (VAB027_1240) | - | 1360785..1361048 (-) | 264 | WP_001899820.1 | hypothetical protein | - |
| VAB027_RS06325 (VAB027_1241) | - | 1361300..1362013 (-) | 714 | WP_000196481.1 | S24 family peptidase | - |
| VAB027_RS06330 (VAB027_1242) | - | 1362089..1362283 (+) | 195 | WP_000844441.1 | Cro/CI family transcriptional regulator | - |
| VAB027_RS20260 (VAB027_1243) | - | 1362571..1362735 (+) | 165 | WP_000532438.1 | hypothetical protein | - |
| VAB027_RS06340 (VAB027_1244) | - | 1362904..1363872 (+) | 969 | WP_001905915.1 | helix-turn-helix domain-containing protein | - |
| VAB027_RS06345 (VAB027_1245) | - | 1363936..1364754 (+) | 819 | WP_046126408.1 | TIGR02642 family protein | - |
| VAB027_RS06350 (VAB027_1246) | - | 1364868..1365713 (+) | 846 | WP_080341745.1 | hypothetical protein | - |
| VAB027_RS06355 (VAB027_1247) | - | 1365706..1367403 (+) | 1698 | WP_046126409.1 | terminase | - |
| VAB027_RS06360 (VAB027_1248) | - | 1367400..1369487 (+) | 2088 | WP_044125582.1 | hypothetical protein | - |
| VAB027_RS06365 (VAB027_1249) | - | 1369782..1369994 (+) | 213 | WP_000066470.1 | cold-shock protein | - |
| VAB027_RS20265 (VAB027_1250) | - | 1370224..1370373 (+) | 150 | WP_000747118.1 | hypothetical protein | - |
| VAB027_RS20470 | - | 1370507..1370665 (+) | 159 | Protein_1237 | sodium:proton antiporter | - |
| VAB027_RS06370 (VAB027_1251) | - | 1370735..1371658 (-) | 924 | Protein_1238 | IS5 family transposase | - |
| VAB027_RS06375 (VAB027_1252) | - | 1371999..1372553 (+) | 555 | WP_046126410.1 | outer membrane beta-barrel protein | - |
| VAB027_RS06380 (VAB027_1253) | uraH | 1373312..1373695 (+) | 384 | WP_000779472.1 | hydroxyisourate hydrolase | - |
| VAB027_RS06385 (VAB027_1254) | - | 1373708..1374211 (+) | 504 | WP_000700649.1 | heme-binding protein | - |
| VAB027_RS06395 (VAB027_1255) | - | 1374612..1375934 (+) | 1323 | WP_046126018.1 | IS4 family transposase | - |
| VAB027_RS06400 (VAB027_1256) | crp | 1375997..1376629 (-) | 633 | WP_000242749.1 | cAMP-activated global transcriptional regulator CRP | Regulator |
| VAB027_RS06405 (VAB027_1257) | - | 1376872..1377741 (-) | 870 | WP_001274667.1 | phosphoribulokinase | - |
| VAB027_RS06410 (VAB027_1258) | - | 1377838..1378047 (-) | 210 | WP_001888622.1 | YheU family protein | - |
| VAB027_RS06415 (VAB027_1259) | - | 1378176..1379165 (-) | 990 | WP_046126411.1 | hydrolase | - |
| VAB027_RS06420 (VAB027_1260) | - | 1379162..1379647 (-) | 486 | WP_001278732.1 | TIGR02444 family protein | - |
| VAB027_RS06425 (VAB027_1261) | - | 1379648..1381564 (-) | 1917 | WP_046126412.1 | ABC transporter ATP-binding protein | - |
| VAB027_RS06430 (VAB027_1262) | kefG | 1381687..1382277 (+) | 591 | WP_001245312.1 | glutathione-regulated potassium-efflux system ancillary protein KefG | - |
| VAB027_RS06435 (VAB027_1264) | kefB | 1382258..1384060 (+) | 1803 | WP_000188331.1 | glutathione-regulated potassium-efflux system protein KefB | - |
| VAB027_RS06440 | - | 1384070..1384270 (+) | 201 | WP_000810609.1 | YheV family putative zinc ribbon protein | - |
| VAB027_RS06445 (VAB027_1265) | slyD | 1384362..1384967 (+) | 606 | WP_000687664.1 | peptidylprolyl isomerase | - |
| VAB027_RS06450 (VAB027_1266) | - | 1385131..1386111 (+) | 981 | WP_046126413.1 | isoaspartyl peptidase/L-asparaginase family protein | - |
| VAB027_RS06455 (VAB027_1267) | - | 1386239..1387537 (+) | 1299 | WP_000527934.1 | adenylosuccinate synthase | - |
| VAB027_RS06460 (VAB027_1268) | motX | 1387745..1388380 (+) | 636 | WP_001883957.1 | flagellar protein MotX | - |
| VAB027_RS06465 (VAB027_1269) | - | 1388407..1390236 (-) | 1830 | WP_046126414.1 | DUF3413 domain-containing protein | - |
| VAB027_RS06470 (VAB027_1270) | rnr | 1390419..1392884 (+) | 2466 | WP_046126415.1 | ribonuclease R | - |
Sequence
Protein
Download Length: 210 a.a. Molecular weight: 23635.45 Da Isoelectric Point: 8.2784
>NTDB_id=139986 VAB027_RS06400 WP_000242749.1 1375997..1376629(-) (crp) [Vibrio cholerae strain 10432-62]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR
Nucleotide
Download Length: 633 bp
>NTDB_id=139986 VAB027_RS06400 WP_000242749.1 1375997..1376629(-) (crp) [Vibrio cholerae strain 10432-62]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGCTGATCCACGCGGGTGAGAAGGCGGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTCATCGGTGAACTCGGCCTGTTTGAAGAAGGT
CAAGAGCGTACCGCTTGGGTTCGTGCCAAAACACCGTGTGAAGTGGCTGAAATCTCATTTAAGAAGTTCCGTCAGTTAAT
CCAAGTTAACCCAGACATTTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCACAGACTCTGCTGAATCTTGCACGTCAGCCAGATGCGATGACTCAC
CCTGATGGTATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAAAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGCTGATCCACGCGGGTGAGAAGGCGGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTCATCGGTGAACTCGGCCTGTTTGAAGAAGGT
CAAGAGCGTACCGCTTGGGTTCGTGCCAAAACACCGTGTGAAGTGGCTGAAATCTCATTTAAGAAGTTCCGTCAGTTAAT
CCAAGTTAACCCAGACATTTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCACAGACTCTGCTGAATCTTGCACGTCAGCCAGATGCGATGACTCAC
CCTGATGGTATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAAAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| crp | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| crp | Haemophilus influenzae Rd KW20 |
75.49 |
97.143 |
0.733 |
| crp | Acinetobacter baumannii D1279779 |
47.343 |
98.571 |
0.467 |