Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NY10_RS08565 Genome accession   NZ_CP010796
Coordinates   1818946..1819464 (+) Length   172 a.a.
NCBI ID   WP_058919574.1    Uniprot ID   -
Organism   Carnobacterium sp. CP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1813946..1824464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY10_RS08555 (NY10_1757) gyrA 1815802..1818369 (+) 2568 WP_058919572.1 DNA gyrase subunit A -
  NY10_RS08560 (NY10_1758) rpsF 1818598..1818897 (+) 300 WP_058919573.1 30S ribosomal protein S6 -
  NY10_RS08565 (NY10_1759) ssb 1818946..1819464 (+) 519 WP_058919574.1 single-stranded DNA-binding protein Machinery gene
  NY10_RS08570 (NY10_1760) rpsR 1819502..1819738 (+) 237 WP_058919575.1 30S ribosomal protein S18 -
  NY10_RS08575 (NY10_1761) - 1820127..1822124 (+) 1998 WP_058919576.1 DHH family phosphoesterase -
  NY10_RS08580 (NY10_1762) rplI 1822127..1822579 (+) 453 WP_058919577.1 50S ribosomal protein L9 -
  NY10_RS08585 (NY10_1763) dnaB 1822803..1824185 (+) 1383 WP_058919578.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19101.81 Da        Isoelectric Point: 5.2596

>NTDB_id=139843 NY10_RS08565 WP_058919574.1 1818946..1819464(+) (ssb) [Carnobacterium sp. CP1]
MINNVVLVGRLTKDADLRYTSNGTAVASFTVAVNRQFTNQKGERDADFINCVAWRKTAETLANFTRKGSLVGVEGRIQTR
SYDNQQGQRVYVTEVVVDTFSMLESKTTTEQRRGSDTNHSGAAPQQNSSNQTQNNYSQKSAPTDSKYPDFGNSDPFEKSS
QPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=139843 NY10_RS08565 WP_058919574.1 1818946..1819464(+) (ssb) [Carnobacterium sp. CP1]
GTGATTAATAATGTTGTTTTAGTTGGAAGATTAACTAAAGACGCGGATTTAAGATACACTTCGAACGGTACAGCTGTGGC
TTCATTCACCGTGGCTGTAAACAGACAGTTTACAAACCAAAAAGGTGAACGGGATGCGGATTTTATTAACTGTGTTGCTT
GGAGAAAGACAGCTGAAACATTGGCTAACTTTACTCGTAAAGGGTCATTAGTTGGTGTGGAAGGACGTATTCAAACGCGT
TCTTATGATAACCAACAAGGACAACGAGTGTACGTTACTGAAGTTGTTGTAGACACTTTCTCAATGTTAGAATCAAAAAC
GACAACAGAACAACGTCGTGGATCTGATACGAATCATTCAGGAGCTGCTCCTCAACAAAATTCATCTAACCAAACACAAA
ATAATTATTCACAAAAATCAGCTCCGACAGATTCGAAATATCCAGATTTTGGAAACTCTGATCCTTTTGAAAAGAGCAGC
CAACCGATAGATATTTCGGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.628

100

0.616
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.07

100

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

61.628

0.39

Multiple sequence alignment