Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NY10_RS01970 Genome accession   NZ_CP010796
Coordinates   374104..374574 (+) Length   156 a.a.
NCBI ID   WP_058918415.1    Uniprot ID   A0A0U3MAP3
Organism   Carnobacterium sp. CP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 369104..379574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY10_RS12525 (NY10_406) - 369810..369959 (+) 150 WP_156413247.1 hypothetical protein -
  NY10_RS01920 (NY10_407) - 369940..370275 (-) 336 WP_058918405.1 hypothetical protein -
  NY10_RS01925 (NY10_408) - 370413..370610 (+) 198 WP_058918406.1 helix-turn-helix transcriptional regulator -
  NY10_RS01930 (NY10_409) - 370616..370954 (+) 339 WP_058918407.1 DUF771 domain-containing protein -
  NY10_RS01935 (NY10_410) - 370959..371222 (+) 264 WP_058918408.1 hypothetical protein -
  NY10_RS12530 (NY10_411) - 371209..371349 (+) 141 WP_156413248.1 hypothetical protein -
  NY10_RS12535 (NY10_412) - 371362..371520 (+) 159 WP_156413249.1 hypothetical protein -
  NY10_RS01940 (NY10_413) - 371630..372550 (+) 921 WP_058918409.1 DnaD domain protein -
  NY10_RS01945 - 372572..372775 (+) 204 WP_156413250.1 hypothetical protein -
  NY10_RS01950 (NY10_414) - 372772..372987 (+) 216 WP_058918411.1 hypothetical protein -
  NY10_RS01955 (NY10_415) - 372984..373481 (+) 498 WP_058918412.1 hypothetical protein -
  NY10_RS01960 - 373478..373684 (+) 207 WP_058918413.1 hypothetical protein -
  NY10_RS01965 (NY10_417) - 373681..374103 (+) 423 WP_058918414.1 hypothetical protein -
  NY10_RS01970 (NY10_418) ssb 374104..374574 (+) 471 WP_058918415.1 single-stranded DNA-binding protein Machinery gene
  NY10_RS01975 (NY10_419) - 374588..375286 (+) 699 WP_058918416.1 putative HNHc nuclease -
  NY10_RS01980 (NY10_420) - 375313..375603 (+) 291 WP_058918417.1 hypothetical protein -
  NY10_RS01985 - 375596..375820 (+) 225 WP_058918418.1 hypothetical protein -
  NY10_RS12540 (NY10_422) - 376030..376203 (+) 174 WP_156413251.1 hypothetical protein -
  NY10_RS01990 (NY10_423) - 376200..376403 (+) 204 WP_058918419.1 hypothetical protein -
  NY10_RS12545 (NY10_424) - 376403..376567 (+) 165 WP_156413252.1 hypothetical protein -
  NY10_RS01995 (NY10_425) - 376568..377068 (+) 501 WP_058918420.1 DUF1642 domain-containing protein -
  NY10_RS02000 (NY10_426) - 377061..377285 (+) 225 WP_058918421.1 hypothetical protein -
  NY10_RS12385 (NY10_427) - 377301..377813 (+) 513 WP_082664153.1 nucleotide modification associated domain-containing protein -
  NY10_RS02010 (NY10_428) - 377828..378280 (+) 453 WP_058918422.1 hypothetical protein -
  NY10_RS02015 - 378545..379045 (+) 501 WP_058918423.1 HNH endonuclease -
  NY10_RS02020 (NY10_429) - 379167..379532 (+) 366 WP_058918424.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17093.85 Da        Isoelectric Point: 4.7410

>NTDB_id=139834 NY10_RS01970 WP_058918415.1 374104..374574(+) (ssb) [Carnobacterium sp. CP1]
MINNVVLVGRLTKELDLRYTANGTAVASFTTAVNRQFTNQKGERDADFINCVIWRKAAENMASYTKKGSLVGLEGRLQTR
SYDNQQGQRVYVTEVVVETFSLLESKSKNTAEQSSGSVPTGPSPAPNRSQGSDAPQNDPFENSSQPIDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=139834 NY10_RS01970 WP_058918415.1 374104..374574(+) (ssb) [Carnobacterium sp. CP1]
ATGATTAACAACGTTGTTTTAGTTGGACGATTAACAAAAGAATTAGATTTACGCTATACAGCAAATGGAACCGCAGTTGC
TTCCTTTACGACAGCTGTAAATAGACAGTTCACCAACCAAAAAGGAGAACGTGATGCAGACTTCATTAATTGTGTCATCT
GGCGCAAGGCTGCAGAGAACATGGCTAGCTATACAAAAAAAGGATCACTCGTTGGCTTAGAAGGACGACTTCAAACAAGA
TCCTATGATAATCAACAAGGACAACGAGTTTATGTGACAGAAGTAGTAGTTGAAACATTCTCATTACTTGAATCAAAGAG
TAAAAATACGGCTGAGCAATCAAGTGGAAGTGTACCTACTGGACCATCACCAGCTCCTAATCGGTCACAAGGAAGTGATG
CTCCACAAAATGACCCATTTGAAAACAGCAGCCAACCGATAGACATATCAGATGATGACTTGCCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.659

100

0.673
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.488

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.658

71.154

0.41

Multiple sequence alignment