Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NY10_RS00475 Genome accession   NZ_CP010796
Coordinates   82429..82899 (+) Length   156 a.a.
NCBI ID   WP_058918143.1    Uniprot ID   A0A0U3MJP7
Organism   Carnobacterium sp. CP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 77429..87899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY10_RS00440 (NY10_103) bet 78623..79396 (+) 774 WP_058918137.1 phage recombination protein Bet -
  NY10_RS00445 (NY10_104) - 79399..80094 (+) 696 WP_058918138.1 MBL fold metallo-hydrolase -
  NY10_RS12645 (NY10_105) - 80110..81081 (+) 972 WP_058918139.1 Lin1244/Lin1753 domain-containing protein -
  NY10_RS00455 (NY10_106) - 81086..81325 (+) 240 WP_058918140.1 hypothetical protein -
  NY10_RS00460 (NY10_107) - 81318..81896 (+) 579 WP_082664140.1 Holliday junction resolvase RecU -
  NY10_RS00465 (NY10_108) - 81918..82205 (+) 288 WP_058918141.1 hypothetical protein -
  NY10_RS00470 (NY10_109) - 82198..82428 (+) 231 WP_058918142.1 hypothetical protein -
  NY10_RS00475 (NY10_110) ssb 82429..82899 (+) 471 WP_058918143.1 single-stranded DNA-binding protein Machinery gene
  NY10_RS00480 (NY10_111) - 82935..83249 (+) 315 WP_058918144.1 MazG-like family protein -
  NY10_RS00485 (NY10_112) - 83254..83487 (+) 234 WP_058918145.1 helix-turn-helix transcriptional regulator -
  NY10_RS00490 (NY10_113) - 83484..83675 (+) 192 WP_058918146.1 hypothetical protein -
  NY10_RS00495 (NY10_114) - 83672..83941 (+) 270 WP_058918147.1 hypothetical protein -
  NY10_RS00500 (NY10_115) - 83997..84368 (+) 372 WP_156413239.1 DUF722 domain-containing protein -
  NY10_RS00510 (NY10_116) - 84826..85041 (+) 216 WP_058918149.1 hypothetical protein -
  NY10_RS00515 (NY10_117) terS 85132..85929 (+) 798 WP_058918150.1 phage terminase small subunit -
  NY10_RS00520 (NY10_118) - 85919..87211 (+) 1293 WP_058918151.1 PBSX family phage terminase large subunit -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 16941.52 Da        Isoelectric Point: 4.9116

>NTDB_id=139828 NY10_RS00475 WP_058918143.1 82429..82899(+) (ssb) [Carnobacterium sp. CP1]
MMNNTVLVGRLTKDADLRYTANGIAVASFTVAVNRAYKKENDEQKADFINCVVWRKTAEALANYTKKGSLIGVEGSIQTR
SYDNQQGQRVYVTEVNAREITFLESKKTSAGEGSTNQQTNSQSYSSNSTIGSSQSQTTGYDAGGTPADISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=139828 NY10_RS00475 WP_058918143.1 82429..82899(+) (ssb) [Carnobacterium sp. CP1]
ATGATGAATAACACGGTTTTAGTTGGAAGATTAACAAAGGATGCGGATTTAAGATACACAGCGAATGGCATAGCAGTTGC
TTCATTCACTGTTGCGGTAAATCGTGCATATAAAAAAGAAAATGATGAACAGAAAGCTGATTTCATCAATTGTGTGGTGT
GGAGAAAAACCGCTGAAGCTTTAGCGAACTACACGAAAAAAGGTTCACTAATAGGCGTGGAAGGAAGTATTCAAACACGA
AGCTATGATAATCAACAAGGACAAAGAGTCTATGTTACGGAAGTTAACGCAAGGGAAATAACCTTCTTAGAAAGCAAAAA
AACCAGCGCAGGAGAAGGTTCAACTAATCAACAGACAAATAGTCAAAGTTATAGTTCAAATTCAACAATAGGCAGTAGTC
AAAGTCAAACGACAGGTTATGATGCTGGCGGAACTCCAGCGGACATCTCTGATGATGATTTACCGTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

51.136

100

0.577
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.256

100

0.532
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

67.949

0.397

Multiple sequence alignment