Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ATC05_RS07100 Genome accession   NZ_CP013245
Coordinates   1530022..1530666 (+) Length   214 a.a.
NCBI ID   WP_003085214.1    Uniprot ID   A0A0H2ZLY6
Organism   Pseudomonas aeruginosa strain VA-134     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1525022..1535666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATC05_RS07075 (ATC05_07075) - 1525514..1526995 (-) 1482 WP_003117981.1 AAA family ATPase -
  ATC05_RS07080 (ATC05_07080) - 1527074..1527412 (+) 339 WP_003085225.1 histidine triad nucleotide-binding protein -
  ATC05_RS07085 (ATC05_07085) coq7 1527512..1528159 (+) 648 WP_003085224.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  ATC05_RS07090 (ATC05_07090) speD 1528214..1529008 (-) 795 WP_003101641.1 adenosylmethionine decarboxylase -
  ATC05_RS07095 (ATC05_07095) - 1529328..1529750 (-) 423 WP_003085219.1 OsmC family protein -
  ATC05_RS07100 (ATC05_07100) crp 1530022..1530666 (+) 645 WP_003085214.1 cAMP-activated global transcriptional regulator CRP Regulator
  ATC05_RS07105 (ATC05_07105) trpC 1530728..1531564 (-) 837 WP_003142812.1 indole-3-glycerol phosphate synthase TrpC -
  ATC05_RS07110 (ATC05_07110) trpD 1531561..1532610 (-) 1050 WP_060627564.1 anthranilate phosphoribosyltransferase -
  ATC05_RS07115 (ATC05_07115) - 1532612..1533217 (-) 606 WP_003113175.1 aminodeoxychorismate/anthranilate synthase component II -
  ATC05_RS07120 (ATC05_07120) - 1533636..1533866 (-) 231 WP_003161916.1 hypothetical protein -
  ATC05_RS07125 (ATC05_07125) - 1533863..1534165 (-) 303 WP_003113177.1 hypothetical protein -
  ATC05_RS07130 (ATC05_07130) - 1534165..1535217 (-) 1053 WP_023105702.1 pyocin knob domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24225.01 Da        Isoelectric Point: 8.0525

>NTDB_id=139769 ATC05_RS07100 WP_003085214.1 1530022..1530666(+) (crp) [Pseudomonas aeruginosa strain VA-134]
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK
EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPD
AMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=139769 ATC05_RS07100 WP_003085214.1 1530022..1530666(+) (crp) [Pseudomonas aeruginosa strain VA-134]
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGCTACACCGC
AAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCGGTCACCATCCTCATCG
AGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTCGGCGAGCTGGGATTGTTCGAAAAG
GAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGCGCCAAGGTGGAATGCGAAGTCGCCGAGATCAGCTATGCGAAGTT
CCGCGAACTGTCGCAGCAGGACTCGGAGATCCTCTACACCCTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCC
GCAAGGTGGGCGACCTGGCCTTCCTCGACGTCACCGGACGCGTGGCCCGCACCTTGCTGGACCTGTGCCAGCAACCGGAC
GCCATGACCCACCCGGACGGCATGCAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAAT
GGTCGGACGCGTGCTGAAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGGAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZLY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

67.327

94.393

0.636
  crp Haemophilus influenzae Rd KW20

60.396

94.393

0.57
  crp Acinetobacter baumannii D1279779

54.545

92.523

0.505

Multiple sequence alignment