Detailed information NTG0139763

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: SI82_RS00860
• Genome accession: NZ_CP010783
• Coordinates: 139691..140140 (+)
• Length: 149 a.a.
• NCBI ID: WP_119773875.1
• Uniprot ID: -
• Organism: Streptococcus iniae strain YSFST01-82
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 134691..145140

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SI82_RS00830 (SI82_00830)	-	136417..136782 (+)	366	WP_003098799.1	DUF1033 family protein	-
SI82_RS00835 (SI82_00835)	comYA	136843..137784 (+)	942	WP_003098801.1	competence type IV pilus ATPase ComGA	Machinery gene
SI82_RS00840 (SI82_00840)	comYB	137735..138751 (+)	1017	WP_003098804.1	competence type IV pilus assembly protein ComGB	Machinery gene
SI82_RS00845 (SI82_00845)	comGC/cglC	138752..139078 (+)	327	WP_003098806.1	competence type IV pilus major pilin ComGC	Machinery gene
SI82_RS10635 (SI82_00850)	comGD	139038..139466 (+)	429	WP_003098807.1	competence type IV pilus minor pilin ComGD	-
SI82_RS00855 (SI82_00855)	comGE	139438..139731 (+)	294	WP_031239176.1	competence type IV pilus minor pilin ComGE	-
SI82_RS00860 (SI82_00860)	comYF	139691..140140 (+)	450	WP_119773875.1	competence type IV pilus minor pilin ComGF	Machinery gene
SI82_RS00865 (SI82_00865)	comGG	140130..140483 (+)	354	WP_003098812.1	competence type IV pilus minor pilin ComGG	-
SI82_RS00870 (SI82_00870)	comYH	140545..141501 (+)	957	WP_003098815.1	class I SAM-dependent methyltransferase	Machinery gene
SI82_RS00875 (SI82_00875)	-	141558..142754 (+)	1197	WP_003098816.1	acetate kinase	-
SI82_RS00880 (SI82_00880)	-	142877..143080 (+)	204	WP_003098819.1	helix-turn-helix transcriptional regulator	-
SI82_RS00885 (SI82_00885)	-	143093..143545 (+)	453	WP_003098820.1	hypothetical protein	-
SI82_RS00890 (SI82_00890)	-	143555..144211 (+)	657	WP_003098822.1	CPBP family intramembrane glutamic endopeptidase	-
SI82_RS00895 (SI82_00895)	proC	144245..145015 (-)	771	WP_003098824.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 149 a.a.
• Molecular weight: 16976.98 Da
• Isoelectric Point: 10.2834

>NTDB_id=139763 SI82_RS00860 WP_119773875.1 139691..140140(+) (comYF) [Streptococcus iniae strain YSFST01-82]
MKSIKKSLALRKISLKAFTLLECMLALVILSGAILVYQGMTKSLFFNMSYLVENDQDKWLLFSQQLRAELTGARFEKVEN
NKLYVAKEGKQIAFGLSKQGDFRKTAANGHGYHPMLLDLKDAKISHHNKEITVSITWKSGLERVFLYAF

Nucleotide

• Length: 450 bp

>NTDB_id=139763 SI82_RS00860 WP_119773875.1 139691..140140(+) (comYF) [Streptococcus iniae strain YSFST01-82]
GTGAAAAGCATCAAAAAGTCTTTAGCCTTAAGAAAAATTAGCCTCAAGGCATTTACGCTTTTAGAGTGTATGTTGGCCTT
AGTGATATTGTCAGGTGCCATCTTAGTTTATCAAGGAATGACAAAATCTTTATTTTTTAACATGTCTTATTTGGTTGAAA
ATGATCAGGACAAGTGGTTGTTGTTTTCACAACAGTTGAGAGCTGAGTTAACAGGAGCTCGGTTTGAGAAGGTCGAAAAT
AATAAACTTTACGTAGCAAAAGAAGGAAAGCAGATAGCTTTTGGACTTTCAAAACAAGGAGATTTTCGAAAAACAGCAGC
AAATGGTCATGGTTATCATCCCATGCTTCTGGATCTTAAAGATGCTAAGATTAGTCATCATAATAAGGAGATTACAGTAA
GTATCACTTGGAAAAGTGGGCTAGAAAGAGTCTTTCTTTATGCTTTTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (53-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	52.174	92.617	0.483
comYF	Streptococcus mutans UA159	51.449	92.617	0.477
comGF/cglF	Streptococcus pneumoniae D39	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae Rx1	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae R6	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae TIGR4	46.617	89.262	0.416
comGF/cglF	Streptococcus mitis NCTC 12261	45.865	89.262	0.409
comGF	Lactococcus lactis subsp. cremoris KW2	43.478	92.617	0.403
comGF/cglF	Streptococcus mitis SK321	44.361	89.262	0.396