Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   APQ13_RS09240 Genome accession   NZ_CP013237
Coordinates   1907357..1909372 (+) Length   671 a.a.
NCBI ID   WP_002287573.1    Uniprot ID   -
Organism   Streptococcus mutans strain NG8 isolate Dental Plaque     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1902357..1914372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ13_RS09225 (APQ13_09205) - 1904409..1905443 (+) 1035 WP_061046399.1 3-deoxy-7-phosphoheptulonate synthase -
  APQ13_RS09230 (APQ13_09210) acpS 1905713..1906072 (+) 360 WP_002263463.1 holo-ACP synthase -
  APQ13_RS09235 (APQ13_09215) alr 1906069..1907184 (+) 1116 WP_002263464.1 alanine racemase -
  APQ13_RS09240 (APQ13_09220) recG/mmsA 1907357..1909372 (+) 2016 WP_002287573.1 ATP-dependent DNA helicase RecG Machinery gene
  APQ13_RS09245 (APQ13_09225) - 1909515..1909679 (-) 165 WP_002263466.1 hypothetical protein -
  APQ13_RS09250 (APQ13_09230) - 1909705..1910664 (-) 960 WP_002289768.1 asparaginase -
  APQ13_RS09255 (APQ13_09235) - 1910737..1912122 (+) 1386 WP_002268948.1 Cof-type HAD-IIB family hydrolase -
  APQ13_RS09260 (APQ13_09240) - 1912400..1912849 (-) 450 WP_002263469.1 universal stress protein -
  APQ13_RS09265 (APQ13_09245) - 1912947..1913483 (-) 537 WP_002263470.1 biotin transporter BioY -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75347.22 Da        Isoelectric Point: 8.0562

>NTDB_id=139745 APQ13_RS09240 WP_002287573.1 1907357..1909372(+) (recG/mmsA) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MDLQSSLAVLKGLGPKSAEKFHRLGIYTIEDLLLYYPFRYEDFKAKSVLDLLDGEKAVVTGKVVTPANVQYYGFKRNRLS
FKIKQDEAVIAVSFFNQPYLQDKVELDQDIAIFGKWDQKKSALTGMKILAQVTDDMQPVYHVAQGISQSALIKAIQSAFE
AGYLRFLSENLPQVLLNKYRLLDRQTATRAMHFPKDLEEYKQALRRIKFEELFYFQLNLQVLKANNKSESNGLLITYDHD
QVAAKIAALPFALTNAQKRSLDEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYAAYSAGLQSALMVPTEILAEQHYES
LRTLFPELSIALLTSGMKAAVRRSALAAIADGSVDMIVGTHALIQEGVDYHKLGLVITDEQHRFGVKQRRLFREKGENPD
VLMMTATPIPRTLAITAFGEMDVSLIDELPAGRKPIVTRWVKHEQLDKVLPWVKEQLKKKEQVYVISPLIEESETLDLKN
AVALEEDLKAYFASSANIALMHGRMKNDEKEAIMQAFKKGSIDILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLR
GRVGRGEKQSYTILVANPKTDTGKNRMRIMTKTTDGFVLAEEDLKMRGSGEIFGVRQSGIPEFQVADIVEDYPILEEARK
VASQIVAVKDWCQDKRWAILVQNLKQKEILD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=139745 APQ13_RS09240 WP_002287573.1 1907357..1909372(+) (recG/mmsA) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGGACTTACAGTCATCACTTGCGGTTTTAAAGGGATTAGGTCCTAAGTCTGCAGAAAAATTTCATAGATTAGGCATTTA
TACCATTGAGGACTTGTTGCTTTACTATCCTTTCCGTTATGAGGACTTTAAGGCAAAATCTGTTTTAGATTTGTTAGATG
GTGAAAAAGCTGTTGTTACTGGAAAAGTAGTGACCCCAGCTAATGTACAATATTATGGGTTTAAACGCAATCGTCTATCT
TTTAAAATAAAACAAGATGAAGCTGTTATTGCTGTTTCTTTTTTTAATCAGCCTTATTTACAAGATAAGGTGGAGCTTGA
TCAGGATATTGCTATTTTTGGAAAATGGGATCAAAAGAAGTCAGCTCTTACGGGCATGAAGATTTTGGCTCAAGTGACAG
ATGATATGCAGCCGGTTTATCATGTGGCACAAGGAATATCACAGTCAGCTCTGATTAAGGCTATTCAATCCGCTTTTGAA
GCTGGTTATTTACGCTTTTTATCTGAAAATTTACCGCAGGTTTTGCTTAATAAATATCGTTTGTTAGATAGACAAACAGC
TACGCGGGCTATGCATTTTCCGAAAGATTTGGAAGAATATAAACAAGCCTTGCGCCGCATCAAATTTGAGGAACTCTTTT
ATTTTCAACTCAATTTGCAGGTTCTTAAAGCAAATAATAAATCAGAATCAAATGGTCTGCTTATTACTTATGATCACGAT
CAAGTGGCTGCTAAAATAGCTGCTCTGCCTTTTGCCTTGACGAATGCCCAAAAAAGGAGCTTAGATGAAATTCTGGCAGA
TATGAAGTCTGGCGCTCATATGAATCGGCTTTTACAGGGAGATGTCGGTTCTGGTAAGACAGTCATTGCCAGTCTTGCTA
TGTATGCAGCCTATAGTGCAGGTCTGCAGTCTGCTTTGATGGTTCCTACGGAAATTTTAGCGGAACAACATTATGAAAGT
TTAAGGACTTTATTTCCTGAACTTTCAATTGCACTTTTGACGTCTGGAATGAAGGCTGCTGTAAGACGTTCAGCCTTAGC
AGCTATCGCTGATGGCTCAGTAGATATGATTGTTGGTACCCACGCTCTCATTCAAGAAGGTGTTGATTACCATAAATTAG
GCTTAGTTATTACGGATGAACAACATCGATTTGGTGTTAAGCAAAGGCGACTGTTTAGGGAAAAGGGAGAGAATCCTGAT
GTTCTCATGATGACAGCCACACCTATTCCTAGAACCTTGGCTATTACTGCCTTTGGCGAAATGGATGTTTCTCTTATTGA
TGAATTGCCAGCAGGTCGCAAACCGATTGTTACACGTTGGGTTAAGCATGAACAGTTAGATAAAGTTCTGCCTTGGGTTA
AAGAACAGCTCAAGAAAAAAGAACAAGTCTATGTCATTTCACCTTTGATTGAGGAGTCTGAAACCTTGGATTTGAAAAAT
GCTGTCGCTTTAGAAGAAGACTTAAAAGCTTATTTTGCGTCGTCTGCTAATATTGCTCTTATGCATGGTCGTATGAAAAA
TGATGAAAAAGAAGCCATTATGCAGGCTTTCAAAAAGGGCAGTATTGATATTCTGGTTTCAACAACTGTCATTGAAGTTG
GGGTCAATGTACCTAATGCTACGATTATGATTATTATGGATGCCGATCGTTTTGGTCTTAGTCAATTGCATCAATTACGA
GGACGTGTAGGACGTGGAGAAAAGCAATCCTATACCATTTTAGTTGCTAATCCTAAAACGGATACTGGGAAAAATCGCAT
GCGCATTATGACAAAAACAACAGATGGCTTTGTTTTGGCTGAAGAAGATTTAAAAATGCGTGGTTCAGGAGAAATTTTTG
GTGTTCGTCAATCTGGCATTCCTGAATTTCAGGTGGCTGATATTGTGGAAGATTACCCTATTTTAGAAGAGGCTAGAAAA
GTGGCTAGTCAAATTGTGGCCGTTAAAGATTGGTGTCAAGATAAACGATGGGCAATTCTTGTGCAAAATCTTAAGCAAAA
AGAAATTTTGGATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(450-566)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-666)

DEAD/DEAH box helicase (DEAD)

(254-409)

RecG wedge domain (RecG_wedge)

(10-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

69.598

100

0.696
  recG/mmsA Streptococcus pneumoniae R36A

69.598

100

0.696
  recG Bacillus subtilis subsp. subtilis str. 168

49.629

100

0.498
  recG Neisseria meningitidis strain C311

39.663

97.317

0.386

Multiple sequence alignment