Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   APQ13_RS08015 Genome accession   NZ_CP013237
Coordinates   1663606..1664199 (+) Length   197 a.a.
NCBI ID   WP_002266975.1    Uniprot ID   -
Organism   Streptococcus mutans strain NG8 isolate Dental Plaque     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1658606..1669199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ13_RS10050 - 1660966..1661244 (-) 279 Protein_1559 transposase -
  APQ13_RS08010 (APQ13_07995) hexB 1661469..1663424 (+) 1956 WP_002266974.1 DNA mismatch repair endonuclease MutL Machinery gene
  APQ13_RS08015 (APQ13_08000) ruvA 1663606..1664199 (+) 594 WP_002266975.1 Holliday junction branch migration protein RuvA Machinery gene
  APQ13_RS08020 (APQ13_08005) - 1664281..1664841 (+) 561 WP_002266114.1 DNA-3-methyladenine glycosylase I -
  APQ13_RS08025 (APQ13_08010) cinA 1664990..1666246 (+) 1257 WP_002270966.1 competence/damage-inducible protein A Machinery gene
  APQ13_RS08030 (APQ13_08015) recA 1666286..1667437 (+) 1152 WP_002262392.1 recombinase RecA Machinery gene
  APQ13_RS08035 (APQ13_08020) spx 1667522..1667920 (+) 399 WP_002262391.1 transcriptional regulator Spx -
  APQ13_RS08040 (APQ13_08025) - 1668171..1668596 (+) 426 WP_002262390.1 hypothetical protein -
  APQ13_RS10055 - 1668723..1668935 (+) 213 WP_002262389.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21866.09 Da        Isoelectric Point: 5.6313

>NTDB_id=139712 APQ13_RS08015 WP_002266975.1 1663606..1664199(+) (ruvA) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MYDYIKGNLTKITAKYIVLEAGGLGYVINVANPYSFSNQINQAIQIYIHHVVREDAHLLYGFHTEDEKAVFLNLISVSGI
GPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKTAQQMVLDLAGKFVDINEVSTDKSKVSTINNNQELEEAVEAL
LALGYKTNELKKIEKFFEGTTDTAENYIKSALKMLMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=139712 APQ13_RS08015 WP_002266975.1 1663606..1664199(+) (ruvA) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGTACGATTATATTAAAGGTAATTTAACCAAAATTACAGCTAAATATATTGTTTTAGAAGCTGGCGGTTTGGGTTATGT
AATTAATGTTGCCAATCCTTATAGTTTTTCTAATCAGATAAATCAAGCTATTCAAATTTATATTCACCATGTTGTCCGTG
AAGATGCCCATCTTCTTTATGGTTTTCATACTGAGGATGAAAAGGCGGTTTTTCTTAATCTTATCTCTGTTTCAGGAATC
GGTCCAACTTCAGCATTAGCTATTATTGCGGCTGATGATAATGAAGGTTTGGTTAAAGCTATTGACCACAGTGATGTAAA
CTATTTGATGAAATTCCCTAAAATTGGGAAGAAAACAGCTCAACAAATGGTGCTTGATTTAGCAGGTAAATTTGTAGATA
TTAATGAAGTCTCAACTGATAAAAGCAAAGTGAGCACTATTAATAATAATCAAGAACTTGAAGAGGCGGTTGAAGCACTT
TTGGCTCTTGGTTACAAAACAAATGAACTTAAGAAGATAGAAAAATTTTTTGAAGGAACGACTGATACGGCAGAAAATTA
TATTAAATCTGCTCTAAAAATGTTGATGAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(153-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

71.574

100

0.716
  ruvA Streptococcus pneumoniae D39

71.574

100

0.716
  ruvA Streptococcus pneumoniae TIGR4

71.574

100

0.716
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.901

100

0.411